Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I23
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      46   8e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    46   8e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    36   0.006
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    32   0.10 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.31 
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   6.6  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 46.0 bits (104), Expect = 8e-06
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 163 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGE 336
           ST P  ++      C  CG S+ A     A G K H  CFKC  C + L+       EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303

Query: 337 LYCKVCHARKF 369
            YC + +  +F
Sbjct: 304 FYCHLDYHEQF 314



 Score = 37.1 bits (82), Expect = 0.004
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 196 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 360
           KC KC K +     + + G ++H  C+ CG C  LL        E    C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 46.0 bits (104), Expect = 8e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 199 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 354
           C KC +SV +  +   GG  WH  CFKC  C K LD ++     + + +++CK+C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 199 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 354
           C +CG++    E  ++ GG  WHK CF C  C K L+ ++       +G   C  C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74



 Score = 32.7 bits (71), Expect = 0.076
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +1

Query: 193 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 354
           P C  C  +  A   R+      +G   +H+ CF+C  C+K +  +N       ++C  C
Sbjct: 69  PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 199 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 357
           C  CG    A ++ ++    W K C  CGL   +  +  CSE    G   C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 166 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYC 345
           T+P      P+C  CG++ + A E   G +     C+ C   Q    ++ C+E + E  C
Sbjct: 8   TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60

Query: 346 KVC 354
             C
Sbjct: 61  YAC 63


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 256 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 357
           K+H  C  CG C+   +S    E+   ++CK C+
Sbjct: 65  KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 308 ESSNFWHRPHLKHILCHLRPP 246
           E+SN++  P L+H LCH  PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,301
Number of Sequences: 5004
Number of extensions: 42929
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)