Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I18
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.0  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   3.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   6.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.2  

>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -3

Query: 277 RYHSLCQFYNIHHQ--CLVGSHLG 212
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 190 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 354
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 127 VQYQNRAP*SQKMWMPVFVEK-QKKILSFFQDVSQLNTDDEYYKIG 261
           V+ +N+   ++ M M  FV++ ++++ +F  D S++  D+E  K+G
Sbjct: 267 VESENKGLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVG 312


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 224 LTSWKKDRIFFCFSTNTGIHIF*LYGARFWYCTAERDGYKPSQNQ 90
           L+S+     F+ F T  G +   L+  R WY     D Y+PS  Q
Sbjct: 186 LSSYSPFLWFYFFITIVG-NFIPLFTPRVWYPLFPEDNYQPSAEQ 229


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 575 YFIRSRNNETRGNQGAG*QRCRRHTRID 492
           Y + S+NN  +  Q A   +CR  T +D
Sbjct: 99  YILSSKNNPNQNPQAAALTKCREQTFVD 126


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 202 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 294
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,007
Number of Sequences: 5004
Number of extensions: 64940
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)