Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I17
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.53 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   2.8  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   6.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   8.6  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 733 CLRCWGKSGNWNSWR 689
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 327 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLRFIADLVNVVEKRQNLLLLF 169
           DL HH +  F GF VC+  ++  + + + D + LR   + +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 30  ESLRXLTVRFYGSDHEDCLDFSGAYCPRS 116
           E +R +  RFYG   E   D S   CP++
Sbjct: 374 EQVREMFTRFYGHSPEMADDLSDIVCPKN 402


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +1

Query: 184 ILSLFYNVNEISYESEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKNL 348
           I S ++++    +E+E+Y +AQD   +   D       +   +  +   F+PK L
Sbjct: 702 IASAYFSLKNEKFENEFYLLAQDLRRKIMSDVIIKTSKH---LEEFSEKFIPKKL 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,593
Number of Sequences: 5004
Number of extensions: 73939
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)