Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I13
         (1093 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.37 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.65 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.86 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 804 PPPPPPXKXGGXXXXXXPPPP 742
           PPPPPP    G      PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 804 PPPPPPXKXGGXXXXXXPPPP 742
           PPPPPP   G       PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 799 GGXXXXPPPPXFFXXXKXPPPPP 867
           GG    PPPP        PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 804 PPPPPPXKXGGXXXXXXPPPP 742
           PPPPPP           PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 821 GGXXXXPPPPPPKXXGGXXXXFXPPP 744
           G     PPPPPP    G    + P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = -1

Query: 805 PPPPPPXKXXGXXXXXXXPPPXGGGXXXXXXXPPPP 698
           PPPPPP            P P           PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -2

Query: 801 PPPPPXKXGGXXXXXXPPPPXGGXXXXXXGXPPP 700
           P PPP    G      PPP   G        PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -2

Query: 804 PPPPPPXKXGGXXXXXXPPPPXGGXXXXXXGXPPP 700
           P PPP    GG      PPPP G         PPP
Sbjct: 750 PVPPPAPIMGGPPP---PPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 799 GGXXXXPPPPXFFXXXKXPPPPP 867
           G     PPPP F    + PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 804 PPPPPPXKXGGXXXXXXPPPPXG 736
           PPPPPP           PPPP G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 801 PPPPPXKXGGXXXXXXPPPPXGG 733
           PPPPP   G       PPPP  G
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 805 PPPPPPXKXXGXXXXXXXPPPXGGGXXXXXXXPPPP 698
           PPPPPP +           PP G G       PPPP
Sbjct: 312 PPPPPPSRRN------RGKPPIGNGSSNSSLPPPPP 341



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +1

Query: 733 PPPXGGGXXXXXXPPXFXGGGGGGXXXXPPPPXFFXXXKXPPPP 864
           PPP          PP   G         PPPP        P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,698
Number of Sequences: 5004
Number of extensions: 32840
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)