Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I10
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
01_01_0684 + 5255634-5256029,5256222-5256326                           30   2.2  
05_04_0142 - 18372751-18373338                                         29   3.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.7  
01_05_0584 + 23435620-23436408,23436966-23437508                       29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
06_01_0048 + 436156-436406,436514-436693,436725-437133                 28   8.8  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 514 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 672
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>01_01_0684 + 5255634-5256029,5256222-5256326
          Length = 166

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 719 EKGATLPEGEKGGQVSGKRQGRNRRAHEGA 630
           E GA + EGE+GG+   KR+   RR  +GA
Sbjct: 45  EAGAGVAEGEEGGRERRKRRKARRRQRKGA 74


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 725 SYEKGATLPEGEKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 594
           S   G  + E E+GG   G++QGR R+A   A R +RL +  +C
Sbjct: 54  SSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVAC 96


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 346 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 501
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>01_05_0584 + 23435620-23436408,23436966-23437508
          Length = 443

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 627 GSSLVRSPVPTLPLTGYLSAFLPFGKRGAFLIAHAVGISV 746
           GSSL  +     P   YL  ++P G  G F +A  VGI V
Sbjct: 383 GSSLNVTVAVLFPCLSYLKIYMPRGGVGRFEVAAIVGILV 422


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 295 NESAN---ARGEAVCVLGALPLPRSLTRCAR 378
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_0048 + 436156-436406,436514-436693,436725-437133
          Length = 279

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 737 TYSVSYEKGATLPEGEKGGQVSGKRQGRNRRAHEGASRGKR 615
           T++ S    A +  G  GG+ +  RQGR RR  E A+  +R
Sbjct: 28  TFAESGHPLARVGAGGGGGRGAATRQGRRRRHDEAAATARR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,077,774
Number of Sequences: 37544
Number of extensions: 539312
Number of successful extensions: 1615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)