Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I09
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.92 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   2.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   8.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 913 PXPXXGGGXFXXXKXPPPPPPXXXKKKK 830
           P P    G     + PPPPPP   KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 913 PXPXXGGGXFXXXKXPPPPPPXXXKKKKK 827
           P P      F     PPPPPP    KK+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 908 PPXGGGXFXXXXXPPPXPPXXXXKKKKXK 822
           PP     F     PPP PP    KK+K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 365 SIYHCDRSFSNISNTIHSISFVNA 294
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 422 STTQGKTKIHKFTLTSYDLSIYHCDRSFSNISNTIHSISFVNAFFSSVS 276
           STT   + +   TLTS   S      S  +IS+TI S S   + F+S+S
Sbjct: 123 STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISS-SVSTSSFTSLS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,076
Number of Sequences: 5004
Number of extensions: 41112
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)