Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I08
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    29   4.8  
02_05_1096 + 34089572-34089880,34090405-34090470,34090723-340909...    29   6.3  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    28   8.4  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -2

Query: 771 QNXSXKETNXFFVVGVSPGNWNSWAYI-TNGSFSLKXPVIXTXFXVKATIXHLNVVHLIL 595
           ++ S K  +    V  S G   + A+  T+G+ +L  P++   +  + +I HL   H+ +
Sbjct: 16  RSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAATLLLPLLQQSWYQENSIRHLLKTHVSI 75

Query: 594 TSHVDKILRISFVWSR 547
             H D++ R+  + +R
Sbjct: 76  VLHQDRLRRVRQMLTR 91


>02_05_1096 +
           34089572-34089880,34090405-34090470,34090723-34090903,
           34091164-34091360,34091484-34091534,34091609-34091700,
           34092234-34092246,34092278-34092349,34092970-34093048,
           34093092-34093174,34093568-34093711
          Length = 428

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = -2

Query: 600 ILTSHVDKILRISFVWSR*NEVAGVGALDNSYVVGV*EHSLVHVDSGVACCFVETFKIFG 421
           ILT+H  K  RI+ + +   EV   G+L  +   G     ++ +++G  CC V    +  
Sbjct: 110 ILTAHHGK--RIAVIENEYGEVDIDGSLVAAQTAGA--EDIMMLNNGCLCCTVRGDLVRM 165

Query: 420 IIEQLEQRDGFFPHFFVK 367
           I E ++++ G F H  ++
Sbjct: 166 IGELVDKKKGKFDHIIIE 183


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 129 TVPEFKTTPVDAAFVEKQKKILSLFY--NVNEINYEAEYYKVAQDFNIEASKDCYTNMKA 302
           T+  +K T  + A+VE +K++++  Y   + E NY +E+  + +   I+  K     +  
Sbjct: 403 TLINYKVTFENLAYVEAKKRLVNGKYPEKILEWNYNSEH--MIRGLIIDKKKGNIIKVDH 460

Query: 303 YENFMMMYKG 332
           Y N  M Y G
Sbjct: 461 YNNVKMSYHG 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,791
Number of Sequences: 37544
Number of extensions: 328324
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)