Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        29   0.66 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   2.0  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.1  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   8.1  

>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 197 EMADEEINGDTDDIQHDK-DKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDI 352
           E + EE++   + IQ  + D+T +  A HDS      K     EE E SS D+
Sbjct: 352 EASFEEVDDAKESIQEKEIDETTESKATHDSSETSSSKELPKEEEKESSSFDL 404


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
 Frame = +2

Query: 188 NKLEMADEEINGDTDDIQHDKDKTQKKTAKHD--SGVADLE-KVTDYAEEMEISSQDISG 358
           N+ E  DEE + + ++ + +    ++K A+HD  +   D+E +V +  EE+E    +I  
Sbjct: 110 NEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGR 169

Query: 359 ---------ALSLIGDRRNKEAAERLEKEQELQKVSVQK 448
                        +GD R     +R  + QELQ V  ++
Sbjct: 170 EDGFIEEEVGADYVGDDRRHRELDR--QRQELQSVDAER 206


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 352 YVLGGYFHFFSIIS-NFFQV-RHSAIMFSGFLLSFVFVMLNIICITIDFFVC 203
           ++  G+F  FS+I    + + R+   +F    LSF F+   +  I   +F+C
Sbjct: 194 WISSGFFLLFSLIHLGLWTIERNKQKLFEETSLSFSFITTKLRLIETQYFIC 245


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 230 DDIQHDKDKTQKKTAKHDSGVADLEKV-TDYAEEMEISSQDISGALSLIGD 379
           DD++  +   +K T      V +L +V  D+AE ME+  Q+   A  LIGD
Sbjct: 404 DDLEQSRIIFEKATHVPYKTVNELAQVWIDWAE-MELRHQNFDAARKLIGD 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,862
Number of Sequences: 5004
Number of extensions: 31784
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)