Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I05
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   5.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 28/82 (34%), Positives = 33/82 (40%)
 Frame = +3

Query: 585  VAKPDRTIKIPGVSPLEAPSCALPVPTXPLYRIPGPAFLPSGKAWXLFS*LHPGXVSXNS 764
            VA P        V P+ APS A PVP   +   P P  +PSG        +    V   S
Sbjct: 1099 VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP--VPSGAPPVPKPSVAAPPVPAPS 1156

Query: 765  GXPXXXPXPGAXVHXPPRSAPN 830
            G P   P P   V  PP  AP+
Sbjct: 1157 GAP---PVPKPSVAAPPVPAPS 1175


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 765 PNWXIPYQGEAXRKGXTLSXKGERPDQVSGKAAGSEQGERTRELP 631
           P+  IP    A RK      KG RP +   +  G++QG +T E P
Sbjct: 138 PSSPIPILTTAVRK------KGSRPSKPQKEKQGNKQGSKTEESP 176


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 626 PPGSSLVRSPCSDPAALPDTW 688
           PP SSL+++P +D  A P+T+
Sbjct: 149 PPSSSLLKTPDNDFCARPETF 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,552
Number of Sequences: 5004
Number of extensions: 62149
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)