Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_I05
(962 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 35 0.11
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 33 0.45
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 31 1.4
11_01_0385 + 2915532-2916482 30 2.4
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 30 3.2
07_03_1730 - 29099262-29099807 29 5.5
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 7.3
03_04_0216 + 18695292-18696139,18696217-18696339,18697027-186972... 29 7.3
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 7.3
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.6
10_08_0223 - 15986763-15987575 28 9.6
05_04_0075 - 17690097-17690378,17691079-17691216,17692195-176925... 28 9.6
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 34.7 bits (76), Expect = 0.11
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 1/126 (0%)
Frame = +3
Query: 573 LTSEVAKPDRTIKIPGVSPLEAPSCALPVPTXPLYRIPGPAFLPSGKAWXLFS*LH-PGX 749
+T + P+ T P ++P +P +P P P Y P++ PS + ++ P
Sbjct: 618 ITPYPSPPEVTPSPPEITPYPSPPDIVPSP--PSYEPSPPSYEPSPPEYAPEPPVYAPYP 675
Query: 750 VSXNSGXPXXXPXPGAXVHXPPRSAPNRWXXIPVTYRLXFHPXSXXXFLTPLPXXPPXXR 929
P P P + V PP+ AP +P P + + PP
Sbjct: 676 PGIFPSPPEYSPEPPSYVPSPPQYAPQPPSYVPSPPEYAPEPPVYAPYPPGITPSPPEYA 735
Query: 930 PXXNPG 947
P PG
Sbjct: 736 PEPPPG 741
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 32.7 bits (71), Expect = 0.45
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 584 GGETRQDYKDTRRFPPGSSLVRSPCSDPAALPDTWS 691
G R+ ++ RR PP SS V + CS + P+ W+
Sbjct: 876 GHRARRRREERRRLPPPSSAVAADCSPSSGFPNDWA 911
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 31.1 bits (67), Expect = 1.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 591 KPDRTIKIPGVSPLEAPSCALPVPTXPLYRIPGPAFLPSGKAWXLFS 731
+P R + IPG P A PVP P+ ++P PA +P G L S
Sbjct: 54 RPRRALPIPGRGPPPAAVLHAPVPV-PV-QVPAPARMPCGGCCALLS 98
>11_01_0385 + 2915532-2916482
Length = 316
Score = 30.3 bits (65), Expect = 2.4
Identities = 28/113 (24%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Frame = +3
Query: 660 PTXPLYRIPGPAFLPSGKAWXLFS*LHPGXVSX--NSGXPXXXPXPGAXVHXPPRSA--- 824
P P + P P + G W HP + G P P H PP A
Sbjct: 181 PLPPFNQPPTPEWPHPGNKWPPLPPFHPPPTPAWPHPGGNKWPPLPPFPSHPPPTPAWPQ 240
Query: 825 -PNRWXXIPV------TYRLXFHPXSXXXFLTPLPXXPPXXRPXXNPGLYXXP 962
N+W +P HP + L P P PP +PG P
Sbjct: 241 PGNKWPPLPPFPSHPPPTPAWPHPGNQWPPLPPFPFHPPPMPAWPHPGNQWPP 293
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 29.9 bits (64), Expect = 3.2
Identities = 34/122 (27%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Frame = +3
Query: 603 TIKIPGVSPLEA-PSCALP----VPTXPLYRIPG-PAFLPSGKAWXLFS*LHPGXVSXN- 761
TI+IPG+ PL+ P+ +P +P P +IPG P P P +
Sbjct: 95 TIQIPGLPPLQPLPAIQIPGLPPLPQLPTIQIPGLPTLQPLPTIQIPGLPPLPQLPTIQI 154
Query: 762 SGXPXXXPXPGAXVHXPPRSAPNRWXXIPVTYRLXFHPXSXXXFLTPLPXXPPXXRPXXN 941
G P P P + P P IP L P L PLP P +
Sbjct: 155 PGLPPLQPLPAIQIPGLPPLQPLPTIQIPGLPPLPQLPTIQIPGLLPLPPLPSIPITLGS 214
Query: 942 PG 947
PG
Sbjct: 215 PG 216
>07_03_1730 - 29099262-29099807
Length = 181
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 750 PYQGEAXRKGXTLSXKGERPDQVSGKAAGSEQGERTREL 634
P E+ R + G RPDQ + +G E+G+ REL
Sbjct: 75 PGGSESSRPAAAAADDGGRPDQCAVCLSGIEEGDEVREL 113
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.7 bits (61), Expect = 7.3
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +3
Query: 609 KIPGVSPLEAPSC-ALPVPTXPLYRIPGPAFLPSGKAWXLFS*LHPGXVSXNSGXPXXXP 785
K+ +P PS A+ P +P P +P W + +HPG + P
Sbjct: 1590 KLSAAAPPFNPSPPAILSPLAVSVGLPPPGAIPGVAPWPVNVPMHPGHSTMVPSGPPLCT 1649
Query: 786 XPGAXVHXPPRSAPNRWXXIPVTY 857
P PRS PN +P Y
Sbjct: 1650 SPHHLYPPAPRS-PNLLHPVPFIY 1672
>03_04_0216 +
18695292-18696139,18696217-18696339,18697027-18697222,
18697361-18697519
Length = 441
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 723 GXTLSXKGERPDQVSGKAAGSEQGERTRELPG 628
G + S +G+R +Q+SG + ++QGE ++ G
Sbjct: 241 GPSSSRRGDRGEQISGSSDSNDQGEEEVKVEG 272
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 7.3
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 350 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 505
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_08_0223 - 15986763-15987575
Length = 270
Score = 28.3 bits (60), Expect = 9.6
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Frame = -2
Query: 703 GRKAGPGIR*SGXVGTGRAHEGASRGETPGIFIVLSGFATSDVSVDFCDARQGGGA---- 536
G G G VG G G+S P S + D + + DA GGG
Sbjct: 147 GSNGGSGYGAGAGVGQGAGESGSSIAMAP------SPSSGGDYNGGYADAAGGGGGGGGG 200
Query: 535 YGKTPATRPFYGSWPFAG 482
+G PA P YG AG
Sbjct: 201 HGGGPAASPSYGVGAGAG 218
>05_04_0075 -
17690097-17690378,17691079-17691216,17692195-17692552,
17692720-17692805
Length = 287
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 613 YQAFPPWKLPRALSLFRP-XRFTG 681
YQ PP +L ALSL RP RFTG
Sbjct: 188 YQLSPPEELTLALSLIRPANRFTG 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,617,294
Number of Sequences: 37544
Number of extensions: 555274
Number of successful extensions: 1604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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