Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I05
         (962 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC121068-1|AAI21069.1|  876|Homo sapiens family with sequence si...    35   0.38 
BC005074-1|AAH05074.1|  777|Homo sapiens FAM59A protein protein.       35   0.38 
AK025263-1|BAB15094.1|  875|Homo sapiens protein ( Homo sapiens ...    35   0.38 
AL833902-1|CAD38758.1|  545|Homo sapiens hypothetical protein pr...    32   3.6  
AF525164-1|AAQ08897.1|  524|Homo sapiens DERPC protein.                32   3.6  
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        31   6.3  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    31   6.3  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    31   6.3  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    31   6.3  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    31   6.3  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     31   6.3  

>BC121068-1|AAI21069.1|  876|Homo sapiens family with sequence
           similarity 59, member A protein.
          Length = 876

 Score = 35.1 bits (77), Expect = 0.38
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 694 PFSLXGKRGA-FSXSFTLVXYPPIRVVRRSAQXLGLLCTNPPVPPRTGGPLSRSPIVXXS 870
           P  + G  GA    S T +  PP+     + +    L   PPVPPR+  PLS SP +   
Sbjct: 493 PLPIPGTLGAAVKSSDTALPPPPVPPKSEAVREECRLLNAPPVPPRSAKPLSTSPSIPPR 552

Query: 871 T 873
           T
Sbjct: 553 T 553


>BC005074-1|AAH05074.1|  777|Homo sapiens FAM59A protein protein.
          Length = 777

 Score = 35.1 bits (77), Expect = 0.38
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 694 PFSLXGKRGA-FSXSFTLVXYPPIRVVRRSAQXLGLLCTNPPVPPRTGGPLSRSPIVXXS 870
           P  + G  GA    S T +  PP+     + +    L   PPVPPR+  PLS SP +   
Sbjct: 394 PLPIPGTLGAAVKSSDTALPPPPVPPKSEAVREECRLLNAPPVPPRSAKPLSTSPSIPPR 453

Query: 871 T 873
           T
Sbjct: 454 T 454


>AK025263-1|BAB15094.1|  875|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21610 fis, clone COL07333. ).
          Length = 875

 Score = 35.1 bits (77), Expect = 0.38
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 694 PFSLXGKRGA-FSXSFTLVXYPPIRVVRRSAQXLGLLCTNPPVPPRTGGPLSRSPIVXXS 870
           P  + G  GA    S T +  PP+     + +    L   PPVPPR+  PLS SP +   
Sbjct: 493 PLPIPGTLGAAVKSSDTALPPPPVPPKSEAVREECRLLNAPPVPPRSAKPLSTSPSIPPR 552

Query: 871 T 873
           T
Sbjct: 553 T 553


>AL833902-1|CAD38758.1|  545|Homo sapiens hypothetical protein
           protein.
          Length = 545

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +1

Query: 640 PRALSLFRPXRFTGYLVRPFSLXGKRGAFSXSFTLVXYPPIRVVRRSAQXLGLLCTNPPV 819
           P +    RP    G    PF       AFS S   +   P    +RSA   GL  +NP +
Sbjct: 364 PNSAHFSRPVGPMGVNANPFPRGAGSSAFSQSSGTLASNPA-TFQRSA---GLQGSNPTI 419

Query: 820 PPRTGGPLSRSP 855
            PR  GPL  +P
Sbjct: 420 FPRASGPLGPNP 431


>AF525164-1|AAQ08897.1|  524|Homo sapiens DERPC protein.
          Length = 524

 Score = 31.9 bits (69), Expect = 3.6
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +1

Query: 640 PRALSLFRPXRFTGYLVRPFSLXGKRGAFSXSFTLVXYPPIRVVRRSAQXLGLLCTNPPV 819
           P +    RP    G    PF       AFS S   +   P    +RSA   GL  +NP +
Sbjct: 343 PNSAHFSRPVGPMGVNANPFPRGAGSSAFSQSSGTLASNPA-TFQRSA---GLQGSNPTI 398

Query: 820 PPRTGGPLSRSP 855
            PR  GPL  +P
Sbjct: 399 FPRASGPLGPNP 410


>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 618 RTPARRRSRTRSPVRRRSRSRSPARRS 644


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 618 RTPARRRSRTRSPVRRRSRSRSPARRS 644


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 618 RTPARRRSRTRSPVRRRSRSRSPARRS 644


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 583 RTPARRRSRTRSPVRRRSRSRSPARRS 609


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 408 RTPARRRSRTRSPVRRRSRSRSPARRS 434


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 716 RFPXREKGRTRYPVKRXGRNRESARGS 636
           R P R + RTR PV+R  R+R  AR S
Sbjct: 666 RTPARRRSRTRSPVRRRSRSRSPARRS 692


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,010,569
Number of Sequences: 237096
Number of extensions: 2995037
Number of successful extensions: 9118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9055
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12769697060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)