Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I05
         (962 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.9  

>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 615 PGVSPLEAPSCALPVPTXPLYRIPGPAF-LPSGKAW 719
           P  +P  AP+C    P  P Y  P P++  P+G A+
Sbjct: 38  PACAPPPAPACGGGAPPPPAYAAPAPSYGAPAGGAY 73


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 30/117 (25%), Positives = 36/117 (30%), Gaps = 1/117 (0%)
 Frame = +3

Query: 615 PGVSPLEAPSCALPVPTXPLYRI-PGPAFLPSGKAWXLFS*LHPGXVSXNSGXPXXXPXP 791
           P V P       +P P  P   + P P   PS   W       PG      G P   P P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320

Query: 792 GAXVHXPPRSAPNRWXXIPVTYRLXFHPXSXXXFLTPLPXXPPXXRPXXNPGLYXXP 962
                 P R  P     +P        P     +   +P  PP   P   PG+Y  P
Sbjct: 321 -----PPSRFGPPGMGGMPPP------PPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 30/117 (25%), Positives = 36/117 (30%), Gaps = 1/117 (0%)
 Frame = +3

Query: 615 PGVSPLEAPSCALPVPTXPLYRI-PGPAFLPSGKAWXLFS*LHPGXVSXNSGXPXXXPXP 791
           P V P       +P P  P   + P P   PS   W       PG      G P   P P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330

Query: 792 GAXVHXPPRSAPNRWXXIPVTYRLXFHPXSXXXFLTPLPXXPPXXRPXXNPGLYXXP 962
                 P R  P     +P        P     +   +P  PP   P   PG+Y  P
Sbjct: 331 -----PPSRFGPPGMGGMPPP------PPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,764
Number of Sequences: 27780
Number of extensions: 407751
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)