Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_I04
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.0
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 29 3.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.6
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = -3
Query: 897 GGGXXXXPPXX*GGPPPXLXXPP--XXXXNGG 808
GG PP GGPPP L PP NGG
Sbjct: 1578 GGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGG 1609
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = -1
Query: 902 FKGGVXXXPPPXXKGAPPXXXPXPPXKXXMGGVFNXPXGGXF-KIFLGPPKXGETGKPFP 726
F GG P P G PP PP + G GG F G P T FP
Sbjct: 86 FSGGQGSAPQPNQGGYPPQQQQYPPQQGYQQGGQQQGGGGFFPNQGYGQPVMIGTPSVFP 145
Query: 725 LXG 717
+ G
Sbjct: 146 VQG 148
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = -1
Query: 902 FKGGVXXXPPPXXKGAPPXXXPXPPXKXXMGGVFNXPXGGXF-KIFLGPPKXGETGKPFP 726
F GG P P G PP PP + G GG F G P T FP
Sbjct: 128 FSGGQGSAPQPNQGGYPPQQQQYPPQQGYQQGGQQQGGGGFFPNQGYGQPVMIGTPSVFP 187
Query: 725 LXG 717
+ G
Sbjct: 188 VQG 190
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGV---FNXPXGGXFKIFLGPPKXGETGKPFPLXGXXG 708
PPP G PP PP GG P G FK GPP G P+
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIP 801
Query: 707 EFFGXGGVPKKXXP 666
++ VPK P
Sbjct: 802 DYLPPKKVPKVDGP 815
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/99 (28%), Positives = 31/99 (31%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGVFNXPXGGXFKIFLGPPKXGETGKPFPLXGXXGEFF 699
PPP G P PP GG+ P G PP G P P G F
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPP--PPPPPPGGCPPP-PPPPPPGGF- 780
Query: 698 GXGGVPKKXXPGXXKXXXPIGXXFXXXKXTPAXXGXXXK 582
GG P PG P+ + K P G K
Sbjct: 781 -KGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRK 818
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGV---FNXPXGGXFKIFLGPPKXGETGKPFPLXGXXG 708
PPP G PP PP GG P G FK GPP G P+
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIP 801
Query: 707 EFFGXGGVPKKXXP 666
++ VPK P
Sbjct: 802 DYLPPKKVPKVDGP 815
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/99 (28%), Positives = 31/99 (31%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGVFNXPXGGXFKIFLGPPKXGETGKPFPLXGXXGEFF 699
PPP G P PP GG+ P G PP G P P G F
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPP--PPPPPPGGCPPP-PPPPPPGGF- 780
Query: 698 GXGGVPKKXXPGXXKXXXPIGXXFXXXKXTPAXXGXXXK 582
GG P PG P+ + K P G K
Sbjct: 781 -KGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRK 818
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGV---FNXPXGGXFKIFLGPPKXGETGKPFPLXGXXG 708
PPP G PP PP GG P G FK GPP G P+
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIP 384
Query: 707 EFFGXGGVPKKXXP 666
++ VPK P
Sbjct: 385 DYLPPKKVPKVDGP 398
Score = 28.3 bits (60), Expect = 8.0
Identities = 28/99 (28%), Positives = 31/99 (31%)
Frame = -1
Query: 878 PPPXXKGAPPXXXPXPPXKXXMGGVFNXPXGGXFKIFLGPPKXGETGKPFPLXGXXGEFF 699
PPP G P PP GG+ P G PP G P P G F
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGL--PPISGGPP--PPPPPPGGCPPP-PPPPPPGGF- 363
Query: 698 GXGGVPKKXXPGXXKXXXPIGXXFXXXKXTPAXXGXXXK 582
GG P PG P+ + K P G K
Sbjct: 364 -KGGPPPPPPPGMFAPMAPVIPDYLPPKKVPKVDGPMRK 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,648
Number of Sequences: 27780
Number of extensions: 213936
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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