Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_I02
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   5.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 341 PXGGGGXPPPXXFLXXXKKXXXPPPPLFXKKK 436
           P G    PPP        +   PPPP + KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
           G  PPPP    F PP    P   PPG
Sbjct: 7   GNPPPPPPPPGFEPPSQ-PPPPPPPG 31


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 25  LXGESLRICFLSKGPPPAQCHP 90
           L  E LR+ F  K P P Q HP
Sbjct: 305 LENEQLRLFFKEKAPQPFQNHP 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,844
Number of Sequences: 5004
Number of extensions: 19980
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)