Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_I02
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 2.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 2.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 2.4
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.2
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 7.3
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 28 7.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +1
Query: 355 GXPPPXXFFXXXKKXXXXPPPPFXKKKXXXXXXXXXXPPQXXXPPP 492
G PPP F + PPPP PP PPP
Sbjct: 349 GAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPP 394
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -3
Query: 418 GGGGXXXFFXXXQKXXXGGXPPPPXG-XXFXPPXXGEPKXN--PPG 290
GG G + Q G PPPP G + PP G P PPG
Sbjct: 415 GGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPG 460
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPP 293
G PPPP G PP G P PP
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPP 302
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
G PPPP PP G P P G
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTG 278
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPP 293
G PPPP G PP G P PP
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPP 323
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
G PPPP PP G P P G
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTG 299
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPP 293
G PPPP G PP G P PP
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPP 308
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
G PPPP PP G P P G
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTG 284
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
GG PPPP P G P PPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
GG PPPP P G P PPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEPKXNPPG 290
GG PPPP P G P PPG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPG 332
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 291 PGGFXFGSPXXGGXKXXPXGGGGXP 365
PG F G+P GG P GG G P
Sbjct: 311 PGSFAPGAPGPGGPGGYPSGGPGMP 335
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -3
Query: 364 GXPPPPXGXXFXPP-XXGEPKXNPPG 290
G PPPP F PP G P PPG
Sbjct: 315 GMPPPPPPSRFGPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = -3
Query: 364 GXPPPPXGXXFXPP-XXGEPKXNPPG 290
G PPPP F PP G P PPG
Sbjct: 325 GMPPPPPPSRFGPPGMGGMPPPPPPG 350
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 358 PPPPXGXXFXPPXXGEPK 305
PPPP G PP GEP+
Sbjct: 283 PPPPKGTGTPPPPTGEPE 300
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 367 GGXPPPPXGXXFXPPXXGEP 308
GG PPPP G PP +P
Sbjct: 210 GGPPPPPHGYEGYPPPGAQP 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,713,942
Number of Sequences: 27780
Number of extensions: 217843
Number of successful extensions: 692
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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