Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_H09
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0951 - 21769342-21769752 79 4e-15
02_02_0470 - 10700092-10700505 78 8e-15
12_02_0674 - 21745321-21746223,21746229-21747608 31 0.97
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 30 2.9
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 29 3.9
10_07_0138 + 13325418-13325954 29 5.2
07_03_0637 - 20175126-20175137,20176090-20176139,20176382-201763... 29 5.2
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 9.0
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 28 9.0
>10_08_0951 - 21769342-21769752
Length = 136
Score = 79.4 bits (187), Expect = 4e-15
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 187 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLR 366
P KV ++ K K+S++K F+K+VN+ HLMPTRYT+D ++ +A + KK+
Sbjct: 50 PKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVA 109
Query: 367 F--NTRVRFEERYKSGKNKWFFQKLRF 441
+ + R E+R+K+GKN+WFF KLRF
Sbjct: 110 ACKSAKARLEDRFKTGKNRWFFTKLRF 136
Score = 64.5 bits (150), Expect = 1e-10
Identities = 26/63 (41%), Positives = 43/63 (68%)
Frame = +3
Query: 63 KXCLVLSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQD 242
K ++L GR+AGRKA++V+ + EGT D+PYGH VAG+ +YP+ ++D + ++ +
Sbjct: 9 KAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRV 68
Query: 243 KAF 251
K F
Sbjct: 69 KCF 71
>02_02_0470 - 10700092-10700505
Length = 137
Score = 78.2 bits (184), Expect = 8e-15
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = +1
Query: 187 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR-KKL 363
P KV ++ K K+S++K F+K+VN+ H+MPTRYT+D F+ ++ A R KK+
Sbjct: 50 PKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKV 109
Query: 364 RF--NTRVRFEERYKSGKNKWFFQKLRF 441
+ R EER+K+GKN+WFF KLRF
Sbjct: 110 AACKAAKARLEERFKTGKNRWFFTKLRF 137
Score = 66.1 bits (154), Expect = 4e-11
Identities = 27/63 (42%), Positives = 43/63 (68%)
Frame = +3
Query: 63 KXCLVLSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQD 242
K ++L GRYAGRKA++V+ + EGT D+PYGH VAG+ +YP+ ++D + ++ +
Sbjct: 9 KAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRV 68
Query: 243 KAF 251
K F
Sbjct: 69 KCF 71
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 31.5 bits (68), Expect = 0.97
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Frame = +1
Query: 115 SSITXKVPPTSRTGMLSSLVS--TGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPT 288
S+ T K+P T RT +LSS S TP KI + P P+
Sbjct: 534 STATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPS 593
Query: 289 RYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEE 393
+ S K S+ P ++ T R E
Sbjct: 594 TSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGE 628
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 351 FCRVFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLYL 238
F + F+ C ++ EV T W +I YNLH ++L
Sbjct: 378 FIKEFKA-CINDYEEEVEFFTAWEAMISKYNLHNNVWL 414
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 89 VRGSQGYRSQALRRRYLRQAVRACFRRWYRQVPPXKCTRG 208
V G+ G + ++RR+L QA+ + +R R PP RG
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARG 63
>10_07_0138 + 13325418-13325954
Length = 178
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 101 QGYRSQALRRRYLRQAVRACFRRWYRQVPPXKCTRGWERI 220
+G R + R R R+ C RRW R +C+R W R+
Sbjct: 82 RGARRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWRRL 121
>07_03_0637 -
20175126-20175137,20176090-20176139,20176382-20176392,
20176604-20176864,20176894-20176901
Length = 113
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 53 SXGXVVLGLKWPVRGSQGYRSQALRRRYLRQAVRACFRR 169
S G V LGL WP + G + QA R + + V + R
Sbjct: 18 SCGGVTLGLLWPAAAAAGSKRQASRELWSLEMVAHAYGR 56
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 365 RSFLRFAGSFRSFALNFSKLKSTV*RV 285
RSFL AG +R F NFSK+ ++ R+
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRL 479
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 298 LYNVLASSDYSLQPSRKALSWT 233
+YN L SSD S + SRK WT
Sbjct: 46 IYNALTSSDQSSKESRKMALWT 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,237
Number of Sequences: 37544
Number of extensions: 314928
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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