Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H09
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   112   4e-25
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   112   4e-25
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  112 bits (269), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +1

Query: 187 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 360
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 361 LRFNTRVRFEERYKSGKNKWFFQKLRF 441
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +3

Query: 63  KXCLVLSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE 218
           K  LVL G+YAGRKA+VVK   EG SD+ Y HA +AGIDRYP    ++ GK+
Sbjct: 9   KVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  112 bits (269), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +1

Query: 187 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 360
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 361 LRFNTRVRFEERYKSGKNKWFFQKLRF 441
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +3

Query: 63  KXCLVLSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE 218
           K  LVL G+YAGRKA+VVK   EG SD+ Y HA +AGIDRYP    ++ GK+
Sbjct: 9   KVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 69  CLV-LSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDK 245
           C++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ  
Sbjct: 175 CIIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSI 229

Query: 246 AFREGCKL 269
             R+G  L
Sbjct: 230 TIRQGNSL 237


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 69  CLV-LSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDK 245
           C++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ  
Sbjct: 175 CIIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSI 229

Query: 246 AFREGCKL 269
             R+G  L
Sbjct: 230 TIRQGNSL 237


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 69  CLV-LSGRYAGRKAIVVKHYXEGTSDKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDK 245
           C++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ  
Sbjct: 175 CIIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSI 229

Query: 246 AFREGCKL 269
             R+G  L
Sbjct: 230 TIRQGNSL 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,783
Number of Sequences: 27780
Number of extensions: 239493
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)