Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H08
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   174   8e-44
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   1.9  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  174 bits (423), Expect = 8e-44
 Identities = 87/154 (56%), Positives = 108/154 (70%), Gaps = 2/154 (1%)
 Frame = +2

Query: 56  RGTRXLVRSQVPAHMELFXLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNV 235
           RGTR +       H  +  LSTY   YK GD+VDI+ NGA QKGMP K YHG+TGR++NV
Sbjct: 9   RGTRYMFARDFRKH-GVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNV 67

Query: 236 TAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV- 412
           T  A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V 
Sbjct: 68  TRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVP 127

Query: 413 NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 511
            LKR P  P+ AH + +   +P LLAP+ +E VA
Sbjct: 128 ALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 136 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 273
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 413 NLKRQPAPPKAAHIVSGTE 469
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 478 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 392
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 311 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 487
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 488 PI 493
           P+
Sbjct: 419 PV 420


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 373 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 218
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 373 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 218
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 478 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 392
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,105,115
Number of Sequences: 27780
Number of extensions: 369616
Number of successful extensions: 1134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)