Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H08
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 478  DGFLSSTDDVGSFRGSW 428
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 46  CYXPRHQGTCSLAGSXTHGTIPAL 117
           C  P +  TCS++ S T+G + AL
Sbjct: 164 CNSPENN-TCSISNSYTNGCVEAL 186


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 154 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 252
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 154 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 252
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 154 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 252
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 154 RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSR 252
           R Q+ + +   Y      WK+RSR + +   SR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,984
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)