Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H07
         (1043 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 966  PXPPPPPKKKXXXPPPP 1016
            P PPPPP      PPPP
Sbjct: 762  PPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 932  PPPXXXXXXXXPXPPPPPKKKXXXXPPP 1015
            P P        P PPPPP       PPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 933  PXPXXXXXXXXPXPPPPPKKKXXXPPPP 1016
            P P        P PPPP       PPPP
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 966  PXPPPPPKKKXXXPPP 1013
            P PPPPP ++    PP
Sbjct: 311  PPPPPPPSRRNRGKPP 326


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 229 SGPSFQGLXPTXXXPFGKXSKKNPEP 306
           +G SFQ L P    P  + SK  P P
Sbjct: 65  AGESFQNLTPVNSNPSNQNSKTEPNP 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,367
Number of Sequences: 5004
Number of extensions: 24514
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)