Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_H06
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 30 2.0
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 30 2.0
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 29 2.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 2.6
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.6
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 29 4.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.6
07_03_0600 + 19866757-19867218,19867920-19868429 28 6.1
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 28 6.1
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 8.0
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 8.0
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKP 464
PPP PPPP P+ G P + PK P P
Sbjct: 217 PPPS---PPPPPPTVPPRTPGDTPAVVEPKPQPPPPP 250
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXP 476
PPP PPPP P+ G I P P
Sbjct: 395 PPPPPPTPPPPPPLLAPKQQSSGGPILPPAPAP 427
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 495 KIWGPPPKXWGXKXFXGGGGXXXXGGG 575
K W PPPK W F G GG G
Sbjct: 710 KTWSPPPKGWIKFNFHGIGGSKDRSAG 736
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKTXFXXFXKGPP 428
PPP PPPP P GP P P P GPP
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +3
Query: 495 KIWGPPPKXWGXKXFXGGGGXXXXGGGXXXXXXXXXXXPXGGXXFXPP 638
K+ G PP G GGGG GGG GG PP
Sbjct: 86 KLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPP 133
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 473 PRXPFGGKNLGTPPXXLGXKXXFXGGGPXXXGGGG 577
PR P K LG PP G GGG GGGG
Sbjct: 80 PR-PLPIKLLGLPPGGGGAPGPLGGGGARPPGGGG 113
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 473 PRXPFGGKNLGTPPXXLGXKXXFXGGGPXXXGGGGXXXXXXXXXXPP 613
PR P NL PP GGG GGGG PP
Sbjct: 31 PRLPRLAANLSRPPPLAISSPGCDGGGGGGGGGGGGGWWRQGGSGPP 77
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXG--GGPQIFSPKXXPGVKPKTXFXXFXKGPP 428
PPP PPPP+ P G P P G +P GPP
Sbjct: 267 PPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPP 317
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXGG 509
PPP PPPP+ + Q GG
Sbjct: 98 PPPQHYAPPPPQQQYGAQMAGG 119
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = -1
Query: 619 PPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGP 503
PP G PP PPPP GGGP
Sbjct: 43 PPGGGGGDRRGGFQLPPDAAPPPPPPPPPSSAAAGGGGP 81
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = -1
Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKTXFXXFXKGPPXFFWGKNF 404
PPP PPPP P P +P P PK PP + N+
Sbjct: 92 PPPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYPFTNY 148
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 571 PPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPK 461
P PP PK P+ GP+ PK P KPK
Sbjct: 163 PKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPK 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,746
Number of Sequences: 37544
Number of extensions: 401773
Number of successful extensions: 1782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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