Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H06
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.0  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   1.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   1.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   1.4  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = -1

Query: 661 GGXXXXXXGGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKX 482
           GG      G     PP G           PPP    PPPP     P    GGP    P  
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP-PPGGFKGGP---PPPP 788

Query: 481 XPGV 470
            PG+
Sbjct: 789 PPGM 792


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = -1

Query: 661 GGXXXXXXGGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKX 482
           GG      G     PP G           PPP    PPPP     P    GGP    P  
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP-PPGGFKGGP---PPPP 788

Query: 481 XPGV 470
            PG+
Sbjct: 789 PPGM 792


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = -1

Query: 661 GGXXXXXXGGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKX 482
           GG      G     PP G           PPP    PPPP     P    GGP    P  
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP-PPGGFKGGP---PPPP 371

Query: 481 XPGV 470
            PG+
Sbjct: 372 PPGM 375


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -1

Query: 619 PPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGP 503
           PP G           PPP    PPPP+    P    G P
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 280



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/60 (28%), Positives = 17/60 (28%)
 Frame = -1

Query: 637 GGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKT 458
           G     P  G           PPP    PPPP     P    G P    P   P   P T
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPRGSPPT 309


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -1

Query: 619 PPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGP 503
           PP G           PPP    PPPP+    P    G P
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 301



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/60 (28%), Positives = 17/60 (28%)
 Frame = -1

Query: 637 GGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKT 458
           G     P  G           PPP    PPPP     P    G P    P   P   P T
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPRGSPPT 330


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -1

Query: 619 PPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGP 503
           PP G           PPP    PPPP+    P    G P
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSP 286



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/60 (28%), Positives = 17/60 (28%)
 Frame = -1

Query: 637 GGXKXXPPXGXXXXXXXXXXXPPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKT 458
           G     P  G           PPP    PPPP     P    G P    P   P   P T
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---PPPPPPRGSPPT 315


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -2

Query: 663 GGGXXXXXGXGGKXXXXGGXXXXXXXXXXPPPPXXXGPPP 544
           GGG     G GG     GG           P P   GPPP
Sbjct: 121 GGGCGGGGGGGGGGYASGGSGGFASAPVSLPAPSYGGPPP 160


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
 Frame = +2

Query: 485 FGGKNL--GTPPXXLGXKXXFXGGGPXXXGGGGXXXXXXXXXXPPXXXXFPPXPXXXXXP 658
           FGG N   G PP   G    + GGG    GGG           PP      P P     P
Sbjct: 61  FGGNNYNNGPPPFDGGYNRPYGGGG----GGGYGRPQGYVPPPPPPPTQPEPEPEPRPEP 116

Query: 659 PP 664
            P
Sbjct: 117 QP 118


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
 Frame = +2

Query: 455  PGFWFYPRXPFGGKNLGTPPXXLGXKXXFXGGGPXXXGGGGXXXXXXXXXXPPXXXXFPP 634
            P  +++      G  +G  P   G    + GG P   GG            PP     PP
Sbjct: 1541 PSQYYHDSPQNRGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPP 1600

Query: 635  --XPXXXXXPPP 664
               P     PPP
Sbjct: 1601 PGPPPPNGGPPP 1612


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 543 GGGGXXXXGGGXXXXXXXXXXXPXGGXXFXPPXXXXXXPPP 665
           GGGG    GGG             GG  +  P      PPP
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 543 GGGGXXXXGGGXXXXXXXXXXXPXGGXXFXPPXXXXXXPPP 665
           GGGG    GGG             GG  +  P      PPP
Sbjct: 267 GGGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -1

Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKTXFXXFXKGPPXFF 419
           PPP    PPPP+  F P      P        P   P      F  GPP  F
Sbjct: 290 PPPFGFFPPPPRGHFPPPP----PHFMGRGMPPPFMPPP--PHFGMGPPRGF 335


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -1

Query: 574 PPPXXXXPPPPKXXFXPQXXGGGPQIFSPKXXPGVKPKTXFXXFXKGPPXFF 419
           PPP    PPPP+  F P      P        P   P      F  GPP  F
Sbjct: 290 PPPFGFFPPPPRGHFPPPP----PHFMGRGMPPPFMPPP--PHFGMGPPRGF 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,970
Number of Sequences: 27780
Number of extensions: 280652
Number of successful extensions: 1128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)