Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H05
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ...    34   0.12 
Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
           protein Y66H1B.3 protein.
          Length = 1084

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
 Frame = +3

Query: 378 NGKIYEGAGWNHIGAHTLHYNNISIGIGFI------GDFREKLPTQQALQAVQDFLACGV 539
           N K+  G  W  I    LHY   SI +G+I      GD +E+ P Q+ L  +++ L  G+
Sbjct: 116 NKKLILGLVWTLI----LHY---SISMGWIQEKREDGDNKEETPKQKLLNWIRNRLP-GM 167

Query: 540 ENNLLTEDYHV-VGHQQLINTLSPGAVLQSEIESWPHWLDN 659
             +  T D++  V    L+N+++PGA     +E W +W  N
Sbjct: 168 PISNFTSDWNDGVALGALVNSMAPGA-----LEDWENWSPN 203


>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = +3

Query: 267 NDCFTDEECLLS-VNSLRQHHMR-------LAGFKDLGYSFVAGGNGKIYE----GAGWN 410
           ++CF D ECLL+  NS   H+          A +KD+ YS V   +G IY      AGW+
Sbjct: 48  DECFEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWS 106

Query: 411 H 413
           +
Sbjct: 107 Y 107


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 709  SIYSLCK*NIN-PSTFRALSSQWGQLSISDCSTAPGLSVFINC 584
            +I  LC  +++ P  F+ +S Q   + ISDCST   L+ FI C
Sbjct: 1477 AIKGLCFLSLDAPYPFKEMSQQ---IDISDCSTHYSLTTFITC 1516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,730,197
Number of Sequences: 27780
Number of extensions: 388380
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)