Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_H03
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   128   1e-30
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...   126   3e-30
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    57   3e-09
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   1.2  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    27   3.5  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    26   8.2  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  128 bits (309), Expect = 1e-30
 Identities = 66/149 (44%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
 Frame = +3

Query: 90  LGQTLSAPVPAQQSATCQASRFLVGSSCMQGWRVSMDXSHTHILSLP----DDPGTAFFA 257
           +GQTLS PV  + S        L G S MQGWR+SM+ +H+ ILS+      DP   FFA
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDP-VDFFA 59

Query: 258 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 437
           VYDGHGG  +A+  G +L + +   P++  G+   ALK  FL+ D+A+L++D      +G
Sbjct: 60  VYDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSG 119

Query: 438 STAVVVLIKDNTLYCANVGDSRAVASVRG 524
            TA VVL   N LYCAN GDSR V   +G
Sbjct: 120 CTATVVLRVGNKLYCANAGDSRTVLGSKG 148



 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 47/81 (58%), Positives = 57/81 (70%)
 Frame = +1

Query: 511 LVSGGVVETLSYDHKPNNEEELRRIIAGGGWVQLNRVNGNLALSRALGDYVFKRNYRLSP 690
           L S G+ + LS DHKP+NE E  RI A GG+V   RVNGNLALSRA+GD+ FK N  L P
Sbjct: 144 LGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFGRVNGNLALSRAIGDFEFK-NSNLEP 202

Query: 691 QEQIVTAYPDVQVRHVNEDWE 753
           ++QIVTA PDV V  + +D E
Sbjct: 203 EKQIVTALPDVVVHEITDDDE 223



 Score = 34.7 bits (76), Expect = 0.018
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 756 IVIACDGIWEVLTNEEVISFCR 821
           +V+ACDGIW+  T+++VI F R
Sbjct: 225 VVLACDGIWDCKTSQQVIEFVR 246


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score =  126 bits (305), Expect = 3e-30
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 5/150 (3%)
 Frame = +3

Query: 90  LGQTLSAPVPAQQSATCQASRFLVGSSCMQGWRVSMDXSHTHILSLPD----DPGTAFFA 257
           +GQTLS PV  + S++        G S MQGWR+SM+ +H  +L+  D    +P T+FF 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 258 VYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQGFLDLDRAMLEEDMLQEKVAG 437
           V+DGHGG  +A++  +HL   I ++P +  GN +EALK GFL  D A++++  +QE  +G
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQEDPSG 120

Query: 438 STAVVVLIKDN-TLYCANVGDSRAVASVRG 524
            TA   LI D+  +YCAN GDSR V   +G
Sbjct: 121 CTATTALIVDHQVIYCANAGDSRTVLGRKG 150



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/77 (53%), Positives = 58/77 (75%)
 Frame = +1

Query: 523 GVVETLSYDHKPNNEEELRRIIAGGGWVQLNRVNGNLALSRALGDYVFKRNYRLSPQEQI 702
           G  E LS+DHKPNN+ E  RI A GG++   RVNG+LALSRA+GD+ +K++  L P++QI
Sbjct: 150 GTAEPLSFDHKPNNDVEKARITAAGGFIDFGRVNGSLALSRAIGDFEYKKDSSLPPEKQI 209

Query: 703 VTAYPDVQVRHVNEDWE 753
           VTA+PDV + +++ D E
Sbjct: 210 VTAFPDVVIHNIDPDDE 226



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 756 IVIACDGIWEVLTNEEVISFCR 821
           +++ACDGIW+  ++++V+ F R
Sbjct: 228 LILACDGIWDCKSSQQVVEFVR 249


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 15/251 (5%)
 Frame = +3

Query: 114 VPAQQSATCQASRFLVG--SSCMQGWRVSMDXSHTHILSLPDDPGTAFFAVYDGHGGSNI 287
           VP   S   +AS +L G      Q WR SM+ +H  +     +    F AVYDGH G   
Sbjct: 57  VPVGNSRPSKASNWLAGLMEDKNQRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQA 116

Query: 288 AEHAGKHLHKYITARPEYHLGN-IEEALKQGFLDLDRAMLEEDMLQEKVAGSTAVVVLIK 464
           +++  K+LHK +  +        + + + + F++++  + +       + G TA V   +
Sbjct: 117 SDYCQKNLHKVLLEKVRNEPDRLVTDLMDETFVEVNSKIAKAT--HNDICGCTAAVAFFR 174

Query: 465 DNTLYCANVGDSRAVASVRGCGGDTVI*PQAQQRRGAT*DHSWWWLGPVESCEW*SRIVS 644
               Y  N   +R V      G   ++  +  +    + DH        ++ E  SR V+
Sbjct: 175 ----YEKN--RTRRVLYTANAGDARIVLCRDGKAIRLSYDHKG-----SDANE--SRRVT 221

Query: 645 SLGRLRVQEE----L*IIPSRADCYCLSRRASA---SCKRRLG-----VIVIACDGIWEV 788
            LG L VQ      L +  +  D Y L    SA   + + R+        +IACDG+W+V
Sbjct: 222 QLGGLMVQNRINGVLAVTRALGDTY-LKELVSAHPFTTETRIWNGHDEFFIIACDGLWDV 280

Query: 789 LTNEEVISFCR 821
           ++++E + F R
Sbjct: 281 VSDQEAVDFVR 291



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 25/53 (47%), Positives = 32/53 (60%)
 Frame = +1

Query: 511 LVSGGVVETLSYDHKPNNEEELRRIIAGGGWVQLNRVNGNLALSRALGDYVFK 669
           L   G    LSYDHK ++  E RR+   GG +  NR+NG LA++RALGD   K
Sbjct: 196 LCRDGKAIRLSYDHKGSDANESRRVTQLGGLMVQNRINGVLAVTRALGDTYLK 248


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 249 FFAVYDGHGGSNIAEHAGKHLHKYITARPEYHLGNIEEALKQ 374
           F+ ++DGHGG+  +E    +L K I       L + E+ LK+
Sbjct: 87  FYGLFDGHGGTECSEFLSTNLGKII---ENQDLNDTEKILKE 125


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 390 DRAMLEEDMLQEKVAGSTAVVVLIKDNTLYCANVGDSRAVASVRGCGGDTV 542
           D A +EE   QEK    T V     +  +  ANV  ++AV +++    D V
Sbjct: 115 DTAKIEESFEQEKAVDETGVDAKDIELVMAQANVSRAKAVTALKENNSDVV 165


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 198 DXSHTHILSLPDDPGTAFF-AVYDGHGGSNIAEHAGKHL 311
           +  H  ++    D G  +F  ++DGH G N +    +HL
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHL 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,341
Number of Sequences: 5004
Number of extensions: 67956
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)