Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_G24
(990 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.008
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.008
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.008
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 33 0.24
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 33 0.42
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 33 0.42
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.42
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 33 0.42
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 32 0.55
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 30 2.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.9
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 5.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical p... 29 6.8
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 6.8
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 8.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 8.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 8.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 8.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 8.9
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 8.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P C P PPPP G PPP G
Sbjct: 749 GGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXP-XCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P P PPPP GG PPP G
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 33.5 bits (73), Expect = 0.24
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 802 PPXPXVXXXVXXPXXPPPPXGGXXGFPPQXP 894
PP P P PPPP GG G PP P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 33.1 bits (72), Expect = 0.31
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +3
Query: 771 LLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXV------PPPXXGG 899
L P+ GG PP P PPPP GG + PPP GG
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P C P PPPP G PPP G
Sbjct: 749 GGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXP-XCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P P PPPP GG PPP G
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 33.5 bits (73), Expect = 0.24
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 802 PPXPXVXXXVXXPXXPPPPXGGXXGFPPQXP 894
PP P P PPPP GG G PP P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 33.1 bits (72), Expect = 0.31
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +3
Query: 771 LLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXV------PPPXXGG 899
L P+ GG PP P PPPP GG + PPP GG
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 38.3 bits (85), Expect = 0.008
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P C P PPPP G PPP G
Sbjct: 332 GGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPG 374
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 765 GPLLPVXGGXIXPPXP-XCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
G L P+ GG PP P P PPPP GG PPP G
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 33.5 bits (73), Expect = 0.24
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 802 PPXPXVXXXVXXPXXPPPPXGGXXGFPPQXP 894
PP P P PPPP GG G PP P
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 33.1 bits (72), Expect = 0.31
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +3
Query: 771 LLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXV------PPPXXGG 899
L P+ GG PP P PPPP GG + PPP GG
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 768 PLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
P L GG PP P C C P P GG P GG
Sbjct: 58 PSLGGGGGCCPPPAPACGGGCGGGVAPAPIGGGYAQAPQAPIGG 101
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = -1
Query: 813 GXGGGXCXPXXPGEGAPXXXXPXCPAGXAGFFLXGXKTXPXPPPXXGGXXKKGRPG 646
G G P PG+ A P P G A G K P PP G + GRPG
Sbjct: 156 GPAGPPGPPGAPGD-AGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPG 210
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 32.7 bits (71), Expect = 0.42
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 898 PPXFGGG-TXXXPPXGGGGXXGXXQXXXQXGXGGXMXPPXTGRRG 767
PP GGG PP G GG G G GG PP G G
Sbjct: 155 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMG 199
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.42
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 898 PPXFGGG-TXXXPPXGGGGXXGXXQXXXQXGXGGXMXPPXTGRRG 767
PP GGG PP G GG G G GG PP G G
Sbjct: 435 PPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMG 479
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 32.7 bits (71), Expect = 0.42
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 801 PPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXGG 899
PP P P PPPP G PPP GG
Sbjct: 566 PPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGG 598
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 800 PPPXPLXXXLSXXXXXPPPXXGXXXGSPP 886
PPP PL LS PPP G PP
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPP 591
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 802 PPXPXVXXXVXXPXXPPPPXGGXXG 876
PP P + P PPPP GG G
Sbjct: 577 PPPPPPPPMLGGPPPPPPPPGGLMG 601
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 32.3 bits (70), Expect = 0.55
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 771 LLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPP 887
LL G + P P C P PPPP GG PPP
Sbjct: 20 LLEGLGLGLGPQRPQ--QCCCPPPPPPPPCGGGYEAPPP 56
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 771 GAPXXXXPXCPAGXAGFFLXGXKTXPXPPPXXGGXXKKGRPG 646
G+P P PAG AG ++ P PP G K G G
Sbjct: 183 GSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGPPGKDGEAG 224
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +2
Query: 743 QXGXXXXGAPSPGXXGXHXPPPXPLXXXLSXXXXXPPPXXGXXXGSPPKXRGXXA 907
Q G G P PG G + PPP PPP G P RG A
Sbjct: 427 QGGPGGFGPPPPGGPGAYGPPPTGF-----PPVGAPPPGAAGAPGGNPFARGPSA 476
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 764 GAPSPGXXGXHXPPPXPLXXXLSXXXXXPPPXXGXXXGSPP 886
G P P G H P PL PPP G PP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPP 1611
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 801 PPXPXCXXXCXXPXXPPPPXGGXXXVPPP 887
PP P PPPP GG +PPP
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHMPPP 784
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +3
Query: 777 PVXGGXIXPPXPXCXXXCXXPXXPPP--PXGGXXXVPPP 887
P GG PP P P PPP P G PPP
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 769 PFSRXXGATXXPPXPXVXXXVXXPXXPPPPXGGXXGFPPQXPGXXRP 909
P G T PP P + P PPPP G PP PG P
Sbjct: 276 PMPPTPGMTPRPPPPP-SSGMWPPPPPPPP--GRTPGPPGMPGMPPP 319
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = +3
Query: 777 PVXGGXIXPPXPXCXXXCXXPXXPPP--PXGGXXXVPPP 887
P GG PP P P PPP P G PPP
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 769 PFSRXXGATXXPPXPXVXXXVXXPXXPPPPXGGXXGFPPQXPGXXRP 909
P G T PP P + P PPPP G PP PG P
Sbjct: 286 PMPPTPGMTPRPPPPP-SSGMWPPPPPPPP--GRTPGPPGMPGMPPP 329
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -1
Query: 795 CXPXXPG-EGAPXXXXPXCPAGXAGFFLXGXKTXPXPPPXXGGXXKKGRPGVXX*IG 628
C PG GAP P G G G P PP G + G+PG +G
Sbjct: 208 CPAGPPGPSGAPGQKGPSGAPGAPG--QSGGSALPGPPGPAGSPGRSGQPGSNGNVG 262
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 768 PLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGGXXXVPPPXXG 896
P P+ G I PP P PPPP G PPP G
Sbjct: 85 PPPPMFAGGIPPPPPMMGGI-----PPPPPMFGAPPPPPPPSG 122
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 795 CXPXXPG-EGAPXXXXPXCPAGXAGFFLXGXKTXPXPPPXXGGXXKKGRPGV 643
C P PG +G P G +G L G K P P G +GRPG+
Sbjct: 189 CPPGEPGRQGKQGRKGPPGRPGGSG--LPGDKGLPGLPGSMGPVGPEGRPGI 238
>Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical
protein C16C10.11 protein.
Length = 154
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 802 PPXPXVXXXVXXPXXPPPPXGGXXGFPPQXPG 897
PP P P P P G G P Q PG
Sbjct: 31 PPRPAAAAPAYHPPAAPTPMGAPMGAPSQGPG 62
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 804 PXPXCXXXCXXPXXPPPPXGG--XXXVPPPXXGG 899
P P C C PPPP G +PPP G
Sbjct: 35 PPPACGNPCGGGFGPPPPPFGPVGYALPPPPPNG 68
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 24.6 bits (51), Expect(2) = 7.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 771 LLPVXGGXIXPPXPXCXXXCXXPXXPPPP 857
LLP+ PP P P PPPP
Sbjct: 479 LLPLINTNAPPPPPMPSINGHAPNPPPPP 507
Score = 22.2 bits (45), Expect(2) = 7.1
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 846 PPPPXGGXXXVPPP 887
PPPP G PPP
Sbjct: 540 PPPPVGMANGGPPP 553
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = -1
Query: 819 HXGXGGGXCXPXXPG-EGAPXXXXPXCPAGXAG---FFLXGXKTXPXPPPXXGGXXKKGR 652
+ G G P PG +G P P P G +G G K P P G +KG
Sbjct: 1402 YAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLRGEKGM 1461
Query: 651 PGV 643
PG+
Sbjct: 1462 PGL 1464
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = -1
Query: 819 HXGXGGGXCXPXXPG-EGAPXXXXPXCPAGXAG---FFLXGXKTXPXPPPXXGGXXKKGR 652
+ G G P PG +G P P P G +G G K P P G +KG
Sbjct: 1401 YAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLRGEKGM 1460
Query: 651 PGV 643
PG+
Sbjct: 1461 PGL 1463
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = -1
Query: 819 HXGXGGGXCXPXXPG-EGAPXXXXPXCPAGXAG---FFLXGXKTXPXPPPXXGGXXKKGR 652
+ G G P PG +G P P P G +G G K P P G +KG
Sbjct: 1401 YAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLRGEKGM 1460
Query: 651 PGV 643
PG+
Sbjct: 1461 PGL 1463
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = -1
Query: 819 HXGXGGGXCXPXXPG-EGAPXXXXPXCPAGXAG---FFLXGXKTXPXPPPXXGGXXKKGR 652
+ G G P PG +G P P P G +G G K P P G +KG
Sbjct: 1402 YAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLRGEKGM 1461
Query: 651 PGV 643
PG+
Sbjct: 1462 PGL 1464
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = -1
Query: 819 HXGXGGGXCXPXXPG-EGAPXXXXPXCPAGXAG---FFLXGXKTXPXPPPXXGGXXKKGR 652
+ G G P PG +G P P P G +G G K P P G +KG
Sbjct: 1438 YAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVEPGEKGLPGLPGAPGLRGEKGM 1497
Query: 651 PGV 643
PG+
Sbjct: 1498 PGL 1500
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 750 GXXXXGPLLPVXGGXIXPPXPXCXXXCXXPXXPPPPXGG 866
G G P PP P C P PPPP G
Sbjct: 25 GGGGGGGCAPAAPACAPPPPPMCGCAPPPPPPPPPPMCG 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,300
Number of Sequences: 27780
Number of extensions: 223649
Number of successful extensions: 1492
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2584172786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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