Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G19
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   0.95 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   5.0  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   8.8  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   8.8  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 370 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 498
           AK  G   ++ VGG ++ E  EK + ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 473 LLSLIPECCWLNNMVSMELTSP 538
           L +L+PE  W NNM   EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 562  KKIRSTWGSLWHGIKKTFGTTPVDEKESEHVXVHAL 669
            ++IR  W S+W+ + + F    V   E+ HV V AL
Sbjct: 1206 QRIRVEWSSIWNVLGRFFNM--VGSDENRHVAVFAL 1239


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 214  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 393
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y  +  
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184

Query: 394  L 396
            L
Sbjct: 1185 L 1185


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 536 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 378
           A S PS P    S +STP +  ++ +   +    Y   +SVS+ PP  ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 328 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 492
           D+  D+  + TS       + +   +GG   TEE + YN+ +E  +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 509 CSANSTPELMKAVRACCDSSRRLYFSGS 426
           C  NST + M  V  C D   RLY  G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,608
Number of Sequences: 5004
Number of extensions: 55097
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)