Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_G17
(873 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein. 30 4.8
AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein. 30 4.8
AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein. 30 4.8
AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF... 30 4.8
AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD... 30 4.8
AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC... 30 4.8
AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB... 30 4.8
AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA... 30 4.8
AY061553-1|AAL29101.1| 595|Drosophila melanogaster LP08894p pro... 29 6.3
AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-P... 29 6.3
AE014297-1757|AAF54987.1| 595|Drosophila melanogaster CG9307-PA... 29 6.3
AE014134-2452|AAZ66467.1| 395|Drosophila melanogaster CG33681-P... 29 6.3
U31961-5|AAA84404.1| 424|Drosophila melanogaster protein ( Dros... 29 8.4
AE014297-2268|AAF55361.3| 417|Drosophila melanogaster CG10349-P... 29 8.4
>AF069997-1|AAC62234.1| 1027|Drosophila melanogaster CLOCK protein.
Length = 1027
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AF067207-1|AAD10630.1| 1023|Drosophila melanogaster CLOCK protein.
Length = 1023
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AF065133-1|AAC39101.1| 1015|Drosophila melanogaster CLOCK protein.
Length = 1015
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AE014296-1322|AAX52754.1| 961|Drosophila melanogaster CG7391-PF,
isoform F protein.
Length = 961
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 564 PMQPVIAPFPVAPVLSPLPV 583
>AE014296-1321|AAX52753.1| 1027|Drosophila melanogaster CG7391-PD,
isoform D protein.
Length = 1027
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AE014296-1320|AAS65057.1| 1027|Drosophila melanogaster CG7391-PC,
isoform C protein.
Length = 1027
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 630 PMQPVIAPFPVAPVLSPLPV 649
>AE014296-1319|AAN12019.1| 1023|Drosophila melanogaster CG7391-PB,
isoform B protein.
Length = 1023
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AE014296-1318|AAF50516.1| 1023|Drosophila melanogaster CG7391-PA,
isoform A protein.
Length = 1023
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPV 838
P P AP+PV VLSP PV
Sbjct: 626 PMQPVIAPFPVAPVLSPLPV 645
>AY061553-1|AAL29101.1| 595|Drosophila melanogaster LP08894p
protein.
Length = 595
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPVXTT 847
P SPT+AP PV V S TP TT
Sbjct: 453 PLSPTSAPGPVPTVGSSTPKPTT 475
>AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-PA
protein.
Length = 659
Score = 29.5 bits (63), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 669 QVSGKRQGRNRRAHEGASRGK 607
+V KR+GRNR AH SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511
>AE014297-1757|AAF54987.1| 595|Drosophila melanogaster CG9307-PA
protein.
Length = 595
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 779 PFSPTAAPYPVTIVLSPTPVXTT 847
P SPT+AP PV V S TP TT
Sbjct: 453 PLSPTSAPGPVPTVGSSTPKPTT 475
>AE014134-2452|AAZ66467.1| 395|Drosophila melanogaster CG33681-PA
protein.
Length = 395
Score = 29.5 bits (63), Expect = 6.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 692 AWRFLIAHAVXISVRCXSFAPAGLCARXPPFSPTA-APYPVTIVLS 826
+W A A+ + F A CAR PPFS A + V +VLS
Sbjct: 54 SWGNAFADAIKCKFQLILFGDANACARYPPFSRVNWACWMVDVVLS 99
>U31961-5|AAA84404.1| 424|Drosophila melanogaster protein (
Drosophila melanogasterbithorax complex (BX-C), complete
sequence. ).
Length = 424
Score = 29.1 bits (62), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 287 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 382
ES +VC G LP+P L C + GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371
>AE014297-2268|AAF55361.3| 417|Drosophila melanogaster CG10349-PA
protein.
Length = 417
Score = 29.1 bits (62), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 287 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 382
ES +VC G LP+P L C + GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,448,134
Number of Sequences: 53049
Number of extensions: 804385
Number of successful extensions: 2398
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -