Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_G12
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 225 4e-59
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 216 2e-56
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 215 5e-56
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 31 1.3
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 1.7
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 2.2
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 30 2.2
07_03_0845 - 21979581-21981281 29 3.9
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 9.0
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 225 bits (550), Expect = 4e-59
Identities = 104/201 (51%), Positives = 139/201 (69%)
Frame = +1
Query: 250 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 429
TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEVTHDIT + A +
Sbjct: 33 TVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRA 92
Query: 430 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 609
G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +G WDLVGNN P+FFIRD FP
Sbjct: 93 PGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFP 152
Query: 610 SFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYXHMNGYXSHTFKL 789
+H+ K NP +H+++ DF + PE++H +LF D GIP Y HM+G +T+ L
Sbjct: 153 DMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLFDDIGIPADYRHMDGSGVNTYTL 212
Query: 790 VNSQGVGYWVKSTIXLTRGLK 852
VN G ++VK T G+K
Sbjct: 213 VNRAGKSHYVKFHWKPTCGVK 233
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 216 bits (527), Expect = 2e-56
Identities = 101/201 (50%), Positives = 137/201 (68%)
Frame = +1
Query: 250 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 429
TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+FEVTHDI+ + A +
Sbjct: 33 TVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRA 92
Query: 430 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 609
G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G +DLVGNN P+FFIRD FP
Sbjct: 93 PGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMPVFFIRDGMKFP 152
Query: 610 SFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYXHMNGYXSHTFKL 789
+H K +P T++++ DF + PE++H +LF D GIP Y HM G+ +T+ L
Sbjct: 153 DMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLFDDVGIPLNYRHMEGFGVNTYTL 212
Query: 790 VNSQGVGYWVKSTIXLTRGLK 852
+N G + VK T G+K
Sbjct: 213 INKDGKPHLVKFHWKPTCGVK 233
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 198 FITTKSGAPVWNQNGDTNGGQEWSSLI 278
F TT SGAPVWN N G+ L+
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILL 42
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 215 bits (524), Expect = 5e-56
Identities = 98/191 (51%), Positives = 130/191 (68%)
Frame = +1
Query: 250 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 429
TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE THD+T + A S
Sbjct: 45 TVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRS 104
Query: 430 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFP 609
G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G WDL+GNN P+FFIRD FP
Sbjct: 105 PGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFP 164
Query: 610 SFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFGDRGIPDGYXHMNGYXSHTFKL 789
IH K NP +H+++ +DFL+ PE++H +LF D GIP Y HM+G+ +T+
Sbjct: 165 DVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTF 224
Query: 790 VNSQGVGYWVK 822
V +VK
Sbjct: 225 VTRDAKARYVK 235
>04_04_1155 - 31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +1
Query: 274 LLQDVNFLDEMSSFDRERI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 441
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 725 VLLDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 782
Query: 442 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 603
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 783 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGIV-DPNL 827
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 598 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 473
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 244 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 423
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 424 -ESIG 435
E IG
Sbjct: 91 KEQIG 95
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 30.3 bits (65), Expect = 2.2
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +1
Query: 274 LLQDVNFLDEMSSFDRERI-PERVVHA--KGAGAFGYFEVTHDITKYSAAKV-FESIGKR 441
+L D N ++S F ++ ++ H K AG FGY + + + KV + G
Sbjct: 761 VLIDANLNPKISDFGLAKLYDDKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-- 818
Query: 442 TPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTL 603
V T+ G DT+ + K Y + W+L NN P+ + DP L
Sbjct: 819 ---VVLLETLAGRPNYDDTLEED-----KIYIFEWAWELYENNNPLGLV-DPKL 863
>07_03_0845 - 21979581-21981281
Length = 566
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 84 GIKQRTPHSKKGTYKMASRD-PATDQLINYKKTLKDSPGFITTKSGAPVWNQNGDTN 251
GI RT SKK +A+RD P T K +D + K G P W+ NG N
Sbjct: 69 GIWFRTT-SKKAVIWVANRDNPVTSATSPELKISEDGNLVLLNKFGEPKWSSNGTWN 124
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 571 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 479
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,237,022
Number of Sequences: 37544
Number of extensions: 537764
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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