Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_G08
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 100 3e-21
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 31 1.6
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 29 3.8
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597... 29 3.8
03_01_0515 - 3864796-3865425 29 3.8
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 29 3.8
11_06_0445 - 23679918-23680282,23680415-23683349 29 5.0
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 29 5.0
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 29 6.6
01_06_0771 - 31852796-31853092,31853407-31853793,31854001-318549... 29 6.6
10_04_0012 + 7555067-7555867 28 8.8
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 99.5 bits (237), Expect = 3e-21
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +3
Query: 270 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 446
MPGLMACR ++ P++ KGARI+GSLH T+Q AVLIETL LG ++
Sbjct: 1 MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60
Query: 447 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH 608
++AWKGET +EY WC E+ L + G ++I+DDGGD T L+H
Sbjct: 61 RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114
Score = 39.1 bits (87), Expect = 0.005
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +3
Query: 804 TDIMIAGKVCVLAGYGDVGK 863
TD+MIAGKV V+ GYGDVGK
Sbjct: 222 TDVMIAGKVAVVCGYGDVGK 241
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 667 GVHNLYKMFREGLLKVPAINVXXSVXKA 750
GV LY+M G L PAINV SV K+
Sbjct: 175 GVKRLYQMQETGALLFPAINVNDSVTKS 202
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 749 QFXNLYGCRESLLDGI 796
+F NLYGCR SL DG+
Sbjct: 203 KFDNLYGCRHSLPDGL 218
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 243 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 404
KE+M E PG++ R + +++ IA LH V QTA L+ + L +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255
Query: 405 VQWSSSNIYSTQDE 446
V+ S + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 816 IAGKVCVLAGYGDVGKDAPKRSKVWR 893
I GK V+ GY D GKDA + S W+
Sbjct: 592 INGKQEVMIGYSDSGKDAGRLSAAWQ 617
>08_02_0424 -
16957793-16958089,16958215-16958601,16958737-16959735,
16959840-16959994,16960082-16960169,16960241-16960344,
16960424-16960646,16960839-16960923,16961006-16961397,
16962841-16963005
Length = 964
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 816 IAGKVCVLAGYGDVGKDAPKRSKVWR 893
I GK V+ GY D GKDA + S W+
Sbjct: 584 INGKQEVMIGYSDSGKDAGRLSAAWQ 609
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -2
Query: 524 TPNILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 348
+P V +++ + ++ + C + G L +NV +G CS N L +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178
Query: 347 *AAGYSGTFEYFSWSIFPTTCHKAWHF 267
A + + F W I TT K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 816 IAGKVCVLAGYGDVGKDAPKRSKVWR 893
I GK V+ GY D GKDA + S W+
Sbjct: 611 INGKQEVMIGYSDSGKDAGRLSAAWQ 636
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 555 KPLNMILDDGGDLTNLVHTKYPDLLKDV 638
+P + I DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 816 IAGKVCVLAGYGDVGKDAPKRSKVWR 893
I GK ++ GY D GKDA + S W+
Sbjct: 718 IDGKQEIMIGYSDSGKDAGRLSAAWQ 743
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +3
Query: 195 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 374
+PP + ++ GR+ EKE L +R+ A+IL G R G+ ++ V+ A +
Sbjct: 33 RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89
Query: 375 IETLIELGAEVQW 413
E + L E W
Sbjct: 90 NEVIAALAREAGW 102
>01_06_0771 -
31852796-31853092,31853407-31853793,31854001-31854999,
31855084-31855238,31855694-31855784,31855866-31855969,
31856052-31856274,31856415-31856499,31856741-31857132,
31857963-31858130
Length = 966
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 816 IAGKVCVLAGYGDVGKDAPKRSKVW 890
I GK V+ GY D GKDA + S W
Sbjct: 586 IDGKQEVMIGYSDSGKDAGRFSAAW 610
>10_04_0012 + 7555067-7555867
Length = 266
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 810 IMIAGKVCVLAGYGDVGKDAPKRSKVWR 893
++++G+V YGDVG D R WR
Sbjct: 126 LLVSGEVAARQWYGDVGGDRRGRQWAWR 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,910,392
Number of Sequences: 37544
Number of extensions: 455912
Number of successful extensions: 978
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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