Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G07
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    37   0.003
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   4.7  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   8.2  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
 Frame = +2

Query: 191 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 370
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 371 DVIVRP----KR-----EIEKQGILLSRQDKNTAEISTIVSQTYKHEYLQ 493
           DV VRP    KR     EI + GI      ++ + I  + S   KH + Q
Sbjct: 665 DVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHIDLLFS-NMKHLFFQ 713


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 606 EGHTSLITLLEMSYYFASLELTLPKSPSYYL 698
           E HTSL   LE S   ASL+ T   SPS+ L
Sbjct: 658 EYHTSLSKSLEHSSTPASLQATKTPSPSFVL 688


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 137 MQMMADKYYFCKIHFRNDLWALRSLSNXNQILR 39
           ++ +A KYY  KI      W L S+++ N  LR
Sbjct: 219 VEHIAKKYYSSKITKEKVRWCLYSIADSNSYLR 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,758
Number of Sequences: 5004
Number of extensions: 53490
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)