Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G06
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    29   6.2  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   6.2  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   6.2  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   6.2  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    29   6.2  

>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +3

Query: 162 WMPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 338
           W P+     ++ L+  +D   L + +EY  I +  D+  N   + N+ A  E L++ +T
Sbjct: 385 WQPLPFPGYEEYLNIKEDCDNLPSHEEYKTIREACDVFPNYTEFINRVANYEMLEIGKT 443


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +3

Query: 165 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 344
           +P+ ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392

Query: 345 MPKNL 359
           + +N+
Sbjct: 393 LTRNV 397


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +3

Query: 165 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 344
           +P+ ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392

Query: 345 MPKNL 359
           + +N+
Sbjct: 393 LTRNV 397


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 642 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 642 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 642 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
           N  +     V  L H HIH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +3

Query: 165 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 344
           +P+ ++   +++ FFQ +  +N D E Y +  D        N   +    +F+   +TG 
Sbjct: 10  IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 68

Query: 345 MPKNL 359
           + +N+
Sbjct: 69  LTRNV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,833
Number of Sequences: 27780
Number of extensions: 385927
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)