Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_G04
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0083 + 631196-631675 31 0.78
07_01_0080 + 587674-588510 31 1.0
07_03_0177 - 14770777-14772045 27 2.3
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 4.2
01_03_0005 + 11568545-11569119,11569179-11569191 29 5.5
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 28 9.6
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.6
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.6
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 28 9.6
>01_01_0083 + 631196-631675
Length = 159
Score = 31.5 bits (68), Expect = 0.78
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 544 PXGGGGXVFFFXXPPPXXKXXGGGXXXXXKXPPPPXPPXF 663
P GGGG + PP GGG PP P P +
Sbjct: 80 PQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPPNPIVPWY 119
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 538 FXPXGGGGXVFFFXXPPPXXKXXGGGXXXXXKXPPPPXP 654
+ P GGG + PP GGG PPPP P
Sbjct: 77 YPPPQGGGGGYIPYYQPPAGG-GGGGGGFNYPAPPPPNP 114
>07_01_0080 + 587674-588510
Length = 278
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 544 PXGGGGXVFFFXXPPPXXKXXGGGXXXXXKXPPPPXPP 657
P GG +F PPP G PPPP PP
Sbjct: 80 PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPP 117
>07_03_0177 - 14770777-14772045
Length = 422
Score = 27.1 bits (57), Expect(2) = 2.3
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -1
Query: 461 GGXFLKKKXFXFFXGGGGXFLXXGGGXPPXGG 366
GG F K F F GGGG F GGG GG
Sbjct: 387 GGGFGKGGGFGFGVGGGG-FGGGGGGGGGGGG 417
Score = 21.4 bits (43), Expect(2) = 2.3
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -1
Query: 656 GGXGGGGXFXXXXXPPPXXFXXGGG 582
GG GGGG F GGG
Sbjct: 359 GGLGGGGGLGGGGGGGGGGFGGGGG 383
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 586 PPXXKXXGGGXXXXXKXPPPPXPP 657
PP GGG PPPP PP
Sbjct: 28 PPIPSCGGGGGGAGPTPPPPPPPP 51
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 583 PPPXXKXXGGGXXXXXKXPPPPXPPXFFFXKKKKXXFFF 699
P P GGG PPPP PP + + F F
Sbjct: 26 PLPPIPSCGGGGGGAGPTPPPPPPPPHHRRARSEVAFRF 64
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Frame = -1
Query: 656 GGXGGGGXFXXXXXPPPXXFXXGGGXXK--KKTXPPPPXG 543
GG GGGG PPP GGG PPP G
Sbjct: 79 GGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTG 118
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 637 PPPPXPPXFFFXKKKKXXFFFXXKKKKKXGGG 732
P PP PP ++ KKKKK GGG
Sbjct: 58 PAPPPPPGDDDDDEEPINLVLTGKKKKKKGGG 89
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 368 PPXGGXXPXXLKKXPPPXKKXKXFFFLKXPPPXXXFXGXPP 490
PP G P K PPP K PPP G PP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 585 PPPPKXXGGGXXXXXKXTPPXXP 653
PPPP+ GGG + PP P
Sbjct: 18 PPPPQAGGGGGGEFYRGPPPQPP 40
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = -1
Query: 656 GGXGGGGXFXXXXX---PPPXXFXXGGGXXKKKTXPPPP 549
GG GGGG F PPP G K + PPP
Sbjct: 21 GGGGGGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPP 59
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Frame = +1
Query: 550 GGGGXVFFFXXPPPXXKXXGGGXXXXXK---XPPPPXPP 657
GGGG PPP G K PPPP PP
Sbjct: 25 GGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPPPPP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,969,567
Number of Sequences: 37544
Number of extensions: 463530
Number of successful extensions: 2713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2417
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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