Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G03
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0205 + 15167902-15168019,15168107-15168162,15168349-151684...    51   1e-06
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    43   3e-04
08_01_0061 - 428885-428920,429021-429164,429376-429541,429612-42...    36   0.033
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    30   2.9  
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    29   6.7  

>07_03_0205 +
           15167902-15168019,15168107-15168162,15168349-15168479,
           15168567-15168702,15169145-15169303,15169363-15169431
          Length = 222

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
 Frame = +3

Query: 303 ERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKAP----VTEGVLW 464
           ++ G+A + VK D+ GNI R++  Y  D +    L  ++  EI++  A      T G+LW
Sbjct: 40  DKFGSAMSIVKNDIGGNITRLETKYASDPSKYEQLHSMVKVEISSKTAKSSSSCTNGLLW 99

Query: 465 LNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLF 617
           L RA+ F   +F     NL    +  M    + AY  ++KK+H W+    F
Sbjct: 100 LTRAMDFLVALF----HNLVQHPDWQMSQACSDAYSKTLKKWHGWLASSSF 146


>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
 Frame = +3

Query: 276 LQRIWSTLXERLGTAFAPVKFDMQGNIDRIKKNYKFDENSC--LLMLMLEEINNGKA--- 440
           L  +   + +++G   A ++ D+Q NI+R+++ Y  D +    L  ++ +E++ G A   
Sbjct: 90  LSHLLLQVLDKIGPTMAVLRLDVQRNIERLQELYLLDPSKYYNLEEILEKEVDEGTARKV 149

Query: 441 -PVTEGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLF 617
                 +LWL R+ + F +  +  LE    +K      +   AY  ++K +H W++   +
Sbjct: 150 DSCARAILWLTRS-MDFTIALLQRLEEDSDQK--CFAQLVESAYMVTLKPWHGWISSAAY 206

Query: 618 IFICKMSP 641
               K+ P
Sbjct: 207 KIAMKLIP 214


>08_01_0061 -
           428885-428920,429021-429164,429376-429541,429612-429742,
           429884-429939,430513-430687
          Length = 235

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
 Frame = +3

Query: 303 ERLGTAFAPVKFDMQGNIDRIKKNYKFDEN--SCLLMLMLEEINNGKAP----VTEGVLW 464
           + +G     ++ D+Q N+ R++     D +  S L  ++ EE+  G +      T  +LW
Sbjct: 59  DEIGPTLLVLRQDIQQNVQRLQDVLARDPSKYSSLTAIVTEEVEEGTSKKANSCTRAILW 118

Query: 465 LNRALL-FFELVFVD----ILENL-QAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFI 626
           L  A+L    +  ++    +LE L     + +++ +  KAY  ++K +H W++   +   
Sbjct: 119 LASAVLRILPIRSINFSKHLLEGLLNTCDQSSLREIVEKAYITTLKPWHGWISSAAYRVA 178

Query: 627 CKMSP 641
            K+ P
Sbjct: 179 QKLIP 183


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 594 SWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLAS 713
           +W ++ +F++    +  FA ++++  VDGD+ S+  KL S
Sbjct: 340 AWFSRDIFLYRLSKTDFFAVILEATVVDGDLLSWTRKLKS 379


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +3

Query: 516 NLQAKKEINMKYVFTKAYEGSVK---KYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDI 686
           +L  KK++N+KY   +   G  K   KYHS +T   F         F +  +S  +D  I
Sbjct: 256 SLDTKKDVNLKYKDDRLILGKAKIFSKYHSEITYYNF--------NFYEAGRSISLDTGI 307

Query: 687 KS-FETKLASFNITLHLNRCKIDDFFKDNN 773
            +    +  S N  + LNR K +   + NN
Sbjct: 308 SNELSQEEISINDKMKLNREKTNSSDEYNN 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,691,962
Number of Sequences: 37544
Number of extensions: 286207
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)