Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G02
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   163   4e-41
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   163   4e-41
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   163   4e-41

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  163 bits (395), Expect = 4e-41
 Identities = 73/112 (65%), Positives = 88/112 (78%)
 Frame = +2

Query: 149 SHTKKRKGAPKLRSLDYAERHGYIXGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFI 328
           +HT+ RKGA +LR+LD+AERHGYI GVV+ IIHDPGRGAPLA V FR+PY + T  E F+
Sbjct: 17  AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76

Query: 329 APEWLYTGQFVYCGXKATLEVGNVMPVGAMPEGTXVCNLEDXMGDRGRLARA 484
           A E +YTGQFVYCG  A L VGNV+PVG MPEGT + N+E+  GDRG L R+
Sbjct: 77  ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRS 128



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  MGRVIRAQRKGAG 135
           MGRVIRAQRK  G
Sbjct: 1   MGRVIRAQRKSGG 13


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  163 bits (395), Expect = 4e-41
 Identities = 73/112 (65%), Positives = 88/112 (78%)
 Frame = +2

Query: 149 SHTKKRKGAPKLRSLDYAERHGYIXGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFI 328
           +HT+ RKGA +LR+LD+AERHGYI GVV+ IIHDPGRGAPLA V FR+PY + T  E F+
Sbjct: 17  AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76

Query: 329 APEWLYTGQFVYCGXKATLEVGNVMPVGAMPEGTXVCNLEDXMGDRGRLARA 484
           A E +YTGQFVYCG  A L VGNV+PVG MPEGT + N+E+  GDRG L R+
Sbjct: 77  ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRS 128



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  MGRVIRAQRKGAG 135
           MGRVIRAQRK  G
Sbjct: 1   MGRVIRAQRKSGG 13


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  163 bits (395), Expect = 4e-41
 Identities = 73/112 (65%), Positives = 88/112 (78%)
 Frame = +2

Query: 149 SHTKKRKGAPKLRSLDYAERHGYIXGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFI 328
           +HT+ RKGA +LR+LD+AERHGYI GVV+ IIHDPGRGAPLA V FR+PY + T  E F+
Sbjct: 17  AHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFV 76

Query: 329 APEWLYTGQFVYCGXKATLEVGNVMPVGAMPEGTXVCNLEDXMGDRGRLARA 484
           A E +YTGQFVYCG  A L VGNV+PVG MPEGT + N+E+  GDRG L R+
Sbjct: 77  ATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRS 128



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  MGRVIRAQRKGAG 135
           MGRVIRAQRK  G
Sbjct: 1   MGRVIRAQRKSGG 13


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,837
Number of Sequences: 5004
Number of extensions: 46085
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)