Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G02
         (954 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      161   1e-39
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    31   1.8  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  161 bits (390), Expect = 1e-39
 Identities = 70/112 (62%), Positives = 88/112 (78%)
 Frame = +2

Query: 149 SHTKKRKGAPKLRSLDYAERHGYIXGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFI 328
           SHT  RKG  + RSLD+ ER+GY+ GVV DIIHDPGRGAPLA V FR P+++  +KELF+
Sbjct: 18  SHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFV 77

Query: 329 APEWLYTGQFVYCGXKATLEVGNVMPVGAMPEGTXVCNLEDXMGDRGRLARA 484
           A E +YTGQFVYCG +ATL +GNV+P+ ++PEG  VCN+E  +GDRG  ARA
Sbjct: 78  AAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARA 129



 Score = 35.5 bits (78), Expect = 0.063
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 97  MGRVIRAQRKGAGSVF 144
           MGRVIRAQRKGAGSVF
Sbjct: 1   MGRVIRAQRKGAGSVF 16


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 479 RALWKLRHCDWTXXL 523
           + LWK RHCDWT  L
Sbjct: 71  QGLWKCRHCDWTYLL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,821
Number of Sequences: 37544
Number of extensions: 358594
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)