Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G02
         (954 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   173   2e-43

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  173 bits (420), Expect = 2e-43
 Identities = 73/112 (65%), Positives = 92/112 (82%)
 Frame = +2

Query: 149 SHTKKRKGAPKLRSLDYAERHGYIXGVVKDIIHDPGRGAPLAVVHFRDPYKFXTRKELFI 328
           SH K RKGA KLR LDYAERHGYI G+VKDIIHDPGRGAPLA++ FRDPYK+ T K   +
Sbjct: 18  SHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVV 77

Query: 329 APEWLYTGQFVYCGXKATLEVGNVMPVGAMPEGTXVCNLEDXMGDRGRLARA 484
           A E ++TGQF++CG KA +++GN++PVG +PEGT +CN+E+  GDRG +ARA
Sbjct: 78  AAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARA 129



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 97  MGRVIRAQRKGAGSVF 144
           MGR IR QRKGAG +F
Sbjct: 1   MGRRIRIQRKGAGGIF 16


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,795
Number of Sequences: 27780
Number of extensions: 288285
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)