Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G01
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    29   1.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   3.6  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   3.6  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = -3

Query: 580 LYQVDQVDQVLLL--IPFQL-ISQHP-LCHL*GPYNLCHQFDPIDQVIPVVLEGL--QIL 419
           LY     DQ + L    F L I++ P LC   GPY        +D+++P++L+G+    +
Sbjct: 266 LYSTQDSDQNVALEACEFWLAIAEQPDLCSALGPY--------LDKIVPMLLQGMVYSDM 317

Query: 418 DLL*VLEDRQDLDVQ 374
           DLL +  D  D DV+
Sbjct: 318 DLLLLGNDADDYDVE 332


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 717 SNGSRESIKPTHPHXSFL 664
           SN S  S KP+HP  SFL
Sbjct: 805 SNNSSNSFKPSHPSQSFL 822


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 385 LDVQTGLENRVNLDTLILLYHPFLPV--SLVRPDDLEVQDVLENPENLFGHLA 233
           +D+      ++N D + LLY PF  +  S ++P D    +  E  ++ +G L+
Sbjct: 303 MDIHATFIQKLNYDLINLLYEPFHNIYSSFIKPIDDRRLEFDEQSKSFYGSLS 355


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 368 PGEPGKPGYPNSPLSPFSPCEP 303
           P  P     PN+P +PFSP  P
Sbjct: 266 PVYPSMKDVPNNPFTPFSPINP 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,210
Number of Sequences: 5004
Number of extensions: 36761
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)