Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_G01
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702...    29   3.8  
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    29   3.8  
11_06_0643 - 25773250-25773843                                         29   5.0  
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903...    29   6.6  
06_01_0145 + 1092764-1093351                                           29   6.6  
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    29   6.6  

>05_07_0262 +
           28769335-28769391,28769732-28769855,28770175-28770266,
           28770673-28771078,28772057-28772184,28772273-28772332,
           28772814-28772963,28772999-28773061,28773062-28773217,
           28773361-28773572,28773698-28773796,28774343-28774512,
           28774592-28775040
          Length = 721

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 229 GFPXHLSDQANQ*HLAYPGAPGKPCXPFAPTLPGKTRKTWXPSGP 95
           GF  ++   +    +A P APG+P     P   G T   + P GP
Sbjct: 555 GFSGNIPTSSQVSQVAKPVAPGRPVGSVFPYETGSTNDPYGPRGP 599


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 308 HREKRVIKEN*GIQVYPVLQASLDVQVLSVLKDLKEIKDLKALQXYRDYLV 460
           H  +R +    G  + P  +  +  Q L++LKD+  IK++   +  RDYL+
Sbjct: 169 HFLRRFVLFTIGYILCPTTKPIVSSQYLALLKDIDNIKNINWARITRDYLI 219


>11_06_0643 - 25773250-25773843
          Length = 197

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 178 PGAPGKPCXPFAPTLPGKTRKTWXPS 101
           PGA   PC P +P +P      W  S
Sbjct: 120 PGASSPPCLPTSPAIPSPRASVWWSS 145


>12_02_1151 +
           26488686-26488792,26488897-26489142,26490246-26490381,
           26490502-26490561,26490648-26490740,26491421-26491663,
           26491828-26491968,26492312-26492482,26492813-26492899,
           26492954-26493211,26493300-26493445,26493535-26493922,
           26493935-26494092,26494267-26494540,26494721-26494894
          Length = 893

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = +2

Query: 380 VQVLSVLKDLKEIKDLKALQXYRDYLVYWVKLVTEVIRALKVTKGMLAYQLKRDQKE 550
           +  LS+   LK  + L   + Y   L+ +++  +EVI  ++    ++AY+L +D ++
Sbjct: 495 IDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSED 551


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 374 DWPGEPGKPGYPNSP 330
           D PGEPG+PG P  P
Sbjct: 13  DQPGEPGQPGEPGQP 27


>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 349 LDTLILLYHPFLPVSLVRPDDLEVQDVLENPENLFGHLALGFPXHLSDQANQ*HLAYPGA 170
           +DT +LL  PFL   L+ P       V        G++ + +P  L D +       P +
Sbjct: 1   MDTPLLLLLPFLAACLLAPRHAAEAAVTSCAPRRCGNVTIAYPFWLPDSSPP-----PSS 55

Query: 169 PGKPCXPFA 143
              PC P A
Sbjct: 56  SSAPCGPAA 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,734
Number of Sequences: 37544
Number of extensions: 244464
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)