Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F24
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   190   1e-48
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   174   9e-44
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     75   8e-14
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    30   2.9  
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    29   3.8  
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   3.8  
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    29   6.6  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    29   6.6  
03_02_0488 - 8824980-8825267,8825364-8827775                           29   6.6  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  190 bits (464), Expect = 1e-48
 Identities = 93/185 (50%), Positives = 137/185 (74%), Gaps = 2/185 (1%)
 Frame = +3

Query: 87  KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 260
           KI K  G E   FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP
Sbjct: 7   KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66

Query: 261 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 440
               KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT+V
Sbjct: 67  YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122

Query: 441 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 620
           +D ILED+V+PAEIVGKRIR +LDG+++IK+ LD  ++   E+K++TF +VY++L G++V
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDV 182

Query: 621 TFEFP 635
            FE+P
Sbjct: 183 AFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  174 bits (423), Expect = 9e-44
 Identities = 86/167 (51%), Positives = 123/167 (73%), Gaps = 2/167 (1%)
 Frame = +3

Query: 141 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 314
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 315 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 494
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153

Query: 495 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 635
           +R  LDG +++K+ LD  ++   E+K+DTF SVY++L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 42/98 (42%), Positives = 63/98 (64%)
 Frame = +3

Query: 195 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 374
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 375 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 488
           P +K    +    PR+RTL +V+D ILED+V    ++G
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 465 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 572
           +FPA I G  +  KLD ++L K H D+ +   ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623


>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 414 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 530
           P +RTLT+ +D IL+D +  A+I GK +    + + +IK
Sbjct: 86  PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 409 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 293
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 147 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 281
           LVE+    D   ++ + Y+     + L++K  +++Y+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 147 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 281
           LVE+    D   ++ + Y+     + L +K  ++IY+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 96  KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 272
           ++SG   + FET +S A++E+E N+ L        +  +K+I  H++   I Y  P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358

Query: 273 KAFQKI 290
            + +++
Sbjct: 359 DSSEEL 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,289
Number of Sequences: 37544
Number of extensions: 348718
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)