Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F21
         (1062 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    26   1.3  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    26   1.3  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        24   8.4  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        24   8.4  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    24   8.4  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    24   9.9  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 25.8 bits (54), Expect(2) = 1.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 98  PLSQXXXXGXPXXLXGGXXXXPPPPPP 18
           PL Q    G P          PPPPPP
Sbjct: 591 PLPQAPNYGTPENRPHAVPPPPPPPPP 617



 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 35  PPPPPPP 15
           PPPPPPP
Sbjct: 630 PPPPPPP 636


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 25.8 bits (54), Expect(2) = 1.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 98  PLSQXXXXGXPXXLXGGXXXXPPPPPP 18
           PL Q    G P          PPPPPP
Sbjct: 417 PLPQAPNYGTPENRPHAVPPPPPPPPP 443



 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 35  PPPPPPP 15
           PPPPPPP
Sbjct: 456 PPPPPPP 462


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 23.8 bits (49), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  PPPPPPRXP 8
           PPPPPP+ P
Sbjct: 190 PPPPPPQNP 198



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  PHXMEGXXXXPPPPPP 17
           P  M      PPPPPP
Sbjct: 179 PSFMTSLQAPPPPPPP 194


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 23.8 bits (49), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  PPPPPPRXP 8
           PPPPPP+ P
Sbjct: 190 PPPPPPQNP 198



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  PHXMEGXXXXPPPPPP 17
           P  M      PPPPPP
Sbjct: 179 PSFMTSLQAPPPPPPP 194


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 23.8 bits (49), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  PPPPPPRXP 8
           PPPPPP+ P
Sbjct: 190 PPPPPPQNP 198



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 64  PHXMEGXXXXPPPPPP 17
           P  M      PPPPPP
Sbjct: 179 PSFMTSLQAPPPPPPP 194


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 70   SXPHXMEGXXXXPPPPPP 17
            S P    G    PPPPPP
Sbjct: 1001 SAPKAPAGPGGPPPPPPP 1018



 Score = 22.6 bits (46), Expect(2) = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 34   PPPPPPRXP 8
            PPPPPP  P
Sbjct: 1012 PPPPPPPPP 1020


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,892,628
Number of Sequences: 27780
Number of extensions: 88583
Number of successful extensions: 4324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2835266498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)