Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_F19
(985 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.047
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.44
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.58
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.4
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.047
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 752 SPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPP-PXXXXRAPPP 883
+P RP+ PP P P P P PP P APPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.7 bits (66), Expect = 0.33
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 767 PRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAP 877
P P PP PP P A PPPP AP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = +2
Query: 716 AQXPXXAXGAXLSPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAPPP 883
A P A + + P +P G PP P P P + PPP P P
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 755 PXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAPP 880
P +P G PP P P P P PP P +APP
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVP--TPSAGLPPVPVPTAKAPP 1238
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 752 SPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAPP 880
SP P PP APL PP P +APP
Sbjct: 981 SPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP 1023
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 855 GGGGPXXRGAXXGXXGWXGGWXXGGXPGRGRXXGERXAP 739
GGG RG G G+ G GG GRGR P
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.58
Identities = 29/101 (28%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Frame = +2
Query: 596 PPPPXTSXXNTX----PLSXYXFXPXXXXPPAXXXXXXGXVXXXAQXPXXAXGAXLSPXX 763
PPPP S +T PLS PPA G A P +P
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSR---AVSNPPAPPPAIPGR-SAPALPPLGNASRTSTPPV 417
Query: 764 RPRPGXPPXXXPPXXPXXPXXAPL--XXGPPPPXXXXRAPP 880
P PP P P P P+ PP P APP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = -2
Query: 879 GGARXXXXGGGGPXXRGAXXGXXGWXGGWXXGGXPGRGRXXG 754
GG R GGG RG G G GG G GRG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGG-RGGSSGGRGGAKG 69
Score = 27.1 bits (57), Expect = 4.1
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = -2
Query: 885 RGG--GARXXXXGGGGPXXRGAXXGXXGWXGGWXXGGXPGRGRXXGERXAPKAXXG 724
RGG G R GG G G G GG GG GRG G R G
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGG-ARGGRGGRGGARGGRGGSSGGRG 65
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 723 PPPXPXGPXSXPXXGPXXGXPRXXXPPXXLXXXXXPPSXXAPP 851
P P P P P P G P PP + PP PP
Sbjct: 742 PTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 767 PRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAPPP 883
P P P PP P P PPPP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 752 SPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAPPP 883
SP P P P P P AP+ GPPPP PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPP-APIMGGPPPP-----PPPP 768
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 847 PPPXPXXPRPPPPP 888
PPP P PPPPP
Sbjct: 752 PPPAPIMGGPPPPP 765
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +2
Query: 752 SPXXRPRPGXPPXXX---PPXXPXXPXXAPLXXGPPPP 856
+P P P PP PP P P A PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 844 PPPPXPXXPRPPPPP 888
PP P P PPPPP
Sbjct: 753 PPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Frame = +1
Query: 844 PPPPXP----XXPRPPPPP 888
PPPP P P PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 725 PXXAXGAXLSPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPPPP 856
P A P P G PP PP P P PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -1
Query: 850 GGAXXEGGXXXXXRXXGGXXXRGXPXXGPXXGXEXGPXGXGGGLG 716
GG GG GG G G GP G GGGLG
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 767 PRPGXPPXXXPPXXPXXPXXAPLXXGPPPPXXXXRAP 877
PRP PP P P P AP PP AP
Sbjct: 145 PRPSIPP-PSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Frame = +2
Query: 716 AQXPXXAXGAXLSPXXRPRPGXP--PXXXPPXXPXXPXXAPLXXGPPPPXXXXRAP 877
A P A P P P P P PP P P P PP +AP
Sbjct: 155 ASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 844 PPPPXPXXPRPPPPP 888
PPPP P PPPP
Sbjct: 13 PPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,963
Number of Sequences: 5004
Number of extensions: 18010
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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