Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F19
         (985 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +2

Query: 752 SPXXRPRPGXPPXXXPPXXPXXPXXAPLXXGPP--PP 856
           +P  +P P   P       P  P   P   GPP  PP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 740 GAXLSPXXRPRPGXPPXXXPPXXPXXPXXAP 832
           G+  +P   P PG PP   P   P     +P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 859 PXXPRPPPPP 888
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 850 PPXPXXPRPPP 882
           PP P  P PPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 853  PXPXXPRPPPPP 888
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,010
Number of Sequences: 438
Number of extensions: 3727
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)