Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F18
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       31   1.3  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    29   5.1  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   8.8  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 283 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLPL 179
           LP  P      W PL   M  T P C +L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = +3

Query: 126 RXARSXQKLKEHGASSCIS---GKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 296
           R  +S QK K      C     G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 82  RKGKSAQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +3

Query: 249 HARFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 362
           + R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 15  YPRLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,495
Number of Sequences: 37544
Number of extensions: 277088
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)