Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F16
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    31   0.80 
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    31   0.80 
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL132943-13|CAC14396.3|  458|Caenorhabditis elegans Hypothetical...    28   9.8  
AL117207-24|CAB60398.3|  458|Caenorhabditis elegans Hypothetical...    28   9.8  
AB096637-1|BAC76737.1|  458|Caenorhabditis elegans mitochondrial...    28   9.8  

>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -2

Query: 351 WVFWRP-----RTCLRGQLERNRLASAERNSDTPFYLWRECSLV*PW-IWSEY 211
           W  W P      TC  G+++RNR+    RN D P      C  + P   WS +
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSW 403


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -2

Query: 351 WVFWRP-----RTCLRGQLERNRLASAERNSDTPFYLWRECSLV*PW-IWSEY 211
           W  W P      TC  G+++RNR+    RN D P      C  + P   WS +
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSW 403


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
            protein F14D2.6 protein.
          Length = 998

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 423  VIVIHKDLPINNLDQLKGLKSCHTGVNRNVGY-KIPLTMLMKRAVFPKMNDHSISPKENE 599
            ++V+     + NLD L+ L+   +  N      ++    L++   FPK+     SPK N 
Sbjct: 843  LLVVKSTAKLENLDFLENLEQIVSLENSTSPIIQLSSNKLLQNVNFPKIKTPLFSPKNNH 902

Query: 600  LKALVDVLHEILH 638
               +VD   EI++
Sbjct: 903  YIEIVDNKQEIIY 915


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 664 KTNSAWKGQYNKLCSMCE 717
           KTN+ W   YNK CS  E
Sbjct: 173 KTNTVWNKNYNKFCSFKE 190


>AL132943-13|CAC14396.3|  458|Caenorhabditis elegans Hypothetical
           protein Y60A3A.13 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 542 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 372
           H+HC R   S    N   +GL AF ++  VYR   +D  +  CF     +R +    LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205


>AL117207-24|CAB60398.3|  458|Caenorhabditis elegans Hypothetical
           protein Y60A3A.13 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 542 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 372
           H+HC R   S    N   +GL AF ++  VYR   +D  +  CF     +R +    LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205


>AB096637-1|BAC76737.1|  458|Caenorhabditis elegans mitochondrial
           phenylalanyl-tRNAsynthetase protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 542 HQHC*RDLVSHVSVNSSMTGLQAFQLVQIVYR*ILMDDNY--CFVTERRIRFFIGSVLL 372
           H+HC R   S    N   +GL AF ++  VYR   +D  +  CF     +R +    LL
Sbjct: 147 HEHCLRAHTSAHQHNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKDELL 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,693,651
Number of Sequences: 27780
Number of extensions: 467701
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)