Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F15
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    94   3e-20
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    93   5e-20
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   6.3  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   8.4  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 84  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 263
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 264 RRFNGGVGRCAQAKQFGTTQ 323
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80



 Score = 33.5 bits (73), Expect = 0.042
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 322 RGRWPKKSAEFLLQLLRNAESNA 390
           + RWP KS +F   LL+NAE+NA
Sbjct: 80  QARWPVKSVKFFYDLLKNAEANA 102


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 45/80 (56%), Positives = 53/80 (66%)
 Frame = +3

Query: 84  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 263
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 264 RRFNGGVGRCAQAKQFGTTQ 323
           RRFNGGVGR AQ K+FG TQ
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQ 80



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 RGRWPKKSAEFLLQLLRNAESNA 390
           + RWP KS  F   LL+NAE+NA
Sbjct: 80  QARWPVKSVNFFYDLLKNAEANA 102


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 144 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 257
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 321 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 238
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 349 EFLLQLLRNAESNATTPFTTIIQSY---GYN*D-*EIITKINL 465
           EF+L  + NA +NA T F+T   +Y   G N D  E+I  +NL
Sbjct: 712 EFILSTIENASNNA-TDFSTAFNNYFADGPNADHSEVINGVNL 753


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 VFTLRTHMRPQWQSGRCRSVVL 216
           V+  R  +   W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,192
Number of Sequences: 5004
Number of extensions: 42396
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)