Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F15
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   104   8e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...    93   3e-19
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    29   6.7  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    28   8.8  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  104 bits (250), Expect = 8e-23
 Identities = 50/74 (67%), Positives = 59/74 (79%)
 Frame = +3

Query: 84  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 263
           M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60

Query: 264 RRFNGGVGRCAQAK 305
           RR+ GGVGR AQAK
Sbjct: 61  RRYCGGVGRTAQAK 74



 Score = 41.5 bits (93), Expect = 9e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +1

Query: 322 RGRWPKKSAEFLLQLLRNAESNA 390
           +GRWP KSA F+L LL+NAESNA
Sbjct: 81  QGRWPAKSARFILDLLKNAESNA 103


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 12/86 (13%)
 Frame = +3

Query: 84  MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 227
           MG+YS EP NP KS KA G +LRVHFK            NT ETA A+RK+PL +A RYL
Sbjct: 1   MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60

Query: 228 KNVIEKKECIPFRRFNGGVGRCAQAK 305
           ++VI  K+ IPFRR+ GGVGR AQ K
Sbjct: 61  EDVIAHKQAIPFRRYCGGVGRTAQVK 86



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +1

Query: 301 QSSLAQHRGRWPKKSAEFLLQLLRNAESNA 390
           +S  +  +GRWP KSA F+L LL+NAESNA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNA 115


>06_03_1130 -
           27826384-27827039,27827800-27828031,27828120-27828491,
           27829243-27829449,27829611-27829704,27829806-27829870,
           27829946-27830398,27830467-27830760,27830837-27831295,
           27831367-27831588,27831755-27831968,27832039-27832494,
           27833280-27833389,27833468-27833644,27833758-27833979,
           27834048-27834167,27834274-27834383,27834552-27834607,
           27835252-27835440,27835602-27835775,27836066-27836281,
           27837066-27837106,27837971-27837986,27838330-27838415,
           27838737-27838910,27839093-27839149,27839720-27840064,
           27840175-27840216,27840377-27840496,27840575-27840724,
           27840830-27841534,27841609-27841954,27842978-27843080,
           27844817-27844860,27845905-27846101,27846322-27846344,
           27846802-27847122,27847406-27847579,27847843-27848047,
           27848817-27848880,27850097-27850278,27850291-27850350,
           27850688-27850748,27851249-27851313,27851491-27851569,
           27851656-27852021,27852442-27852790,27852887-27852989,
           27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 284 WSLCSSKAVWHNTGVAGPRNPPNSSCSY*GTLNQTR 391
           WSL  ++++  N   +GPR  P  S  Y G +N TR
Sbjct: 315 WSLNQARSIRWNLTASGPRPNPQGSYHY-GLVNTTR 349


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +3

Query: 30  IP*DFA---FFLSYFLLREIIMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKM 200
           +P D+A    F ++   ++ ++ + +   +   K C  RGS +R+H KN      +    
Sbjct: 510 LPQDYARIFAFDNFTRTQKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVH 569

Query: 201 PLRRAVRYLKNVIEKKECIPFRRFN 275
           P RR    +  +++ +  I    F+
Sbjct: 570 PSRRLPVVVSGLLQHESKISVLHFS 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,858,044
Number of Sequences: 37544
Number of extensions: 294676
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)