Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F15
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   120   1e-27
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    93   2e-19
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    29   6.0  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +3

Query: 93  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 272
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 273 NGGVGRCAQAKQFGTTQG 326
           +GG+GR AQ KQ+ TTQG
Sbjct: 66  HGGIGRAAQTKQWNTTQG 83



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +1

Query: 322 RGRWPKKSAEFLLQLLRNAESNA 390
           +GRWP KSA+FLL LL+NAESNA
Sbjct: 82  QGRWPVKSADFLLDLLKNAESNA 104


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 49/60 (81%)
 Frame = +3

Query: 93  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 272
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 35  LRFCFFLVIFSLERNNYGSLLSGAG*PCEIMQSAWFKPP 151
           LR C FL IF L   +Y    S +   C + +S WF PP
Sbjct: 6   LRNCLFLFIFLL---SYQQASSFSFEQCNVTRSCWFHPP 41


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
 Frame = +2

Query: 191 QEDAAPSCCSLPQKRD*KER-------VYSIPSLQRRR-WSLCSSKAVWHNTG----VAG 334
           Q++A+PS   +P+  D K R       V + P   R + WS      + HN         
Sbjct: 89  QDEASPSDYQMPRHLDLKPRSSEVRVPVRAAPEPPREQSWSQTEYATLAHNQSHEALYED 148

Query: 335 PRNPPNSSCSY*GTLNQTRQHHSLPSSNP 421
           PR+  +++ S+    +Q+ +HH++ S+ P
Sbjct: 149 PRHQVHATSSHQNPRHQSSRHHNIESTAP 177


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
           protein R134.1 protein.
          Length = 1140

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 383 DSAFLNNCKRNSADFLGQRPLCCAKLLCL-STATNAAVEATE-WNTLFLFNHVFEVTNST 210
           D A+L+  +RN  + +   PL C+ + C+ STAT     A   ++ ++L+       NST
Sbjct: 328 DKAYLDYMQRNILNVVKLPPLNCSTVDCVSSTATGMGAYARHLFDVVYLYGIALTRVNST 387


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 344 DFLGQRPLCCAKLLCLSTATNAAVEATEWNTL 249
           D L  RP C  K+  +S  T++ +E  EW+ L
Sbjct: 120 DGLPHRPACTIKMRAISMMTSSFMENLEWSRL 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,102
Number of Sequences: 27780
Number of extensions: 247876
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)