Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP27_F_F13
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 32 0.38
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 32 0.38
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.5
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 6.2
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXP-----PPXXGGXXXKXXGGKQXXPPPXGXFGG 568
PPP GGG P PP GG G Q PP G GG
Sbjct: 154 PPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 200
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXP-----PPXXGGXXXKXXGGKQXXPPPXGXFGG 568
PPP GGG P PP GG G Q PP G GG
Sbjct: 434 PPPLMGGGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGG 480
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXF 574
PPP GG PPP GG G PPP G F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFK-----GGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPPXPP 532
PPP PPP G GG PPP G + PP PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISGGPPPPPPPP 765
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGG 750
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXF 574
PPP GG PPP GG G PPP G F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFK-----GGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPPXPP 532
PPP PPP G GG PPP G + PP PP
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISGGPPPPPPPP 765
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGG 750
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPG 766
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXF 574
PPP GG PPP GG G PPP G F
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFK-----GGPPPPPPPGMF 376
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPPXPP 532
PPP PPP G GG PPP G + PP PP
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISGGPPPPPPPP 348
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGG 333
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 652 PPPXXXGGXXKXXGGKTXXPPPXG 581
PPP GG GG PPP G
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPG 349
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPPXPP 532
PPP G PPP G PPP FG PP PP
Sbjct: 287 PPPPPS-SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Frame = -2
Query: 705 LWXXPPPKQXGG-----GXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPP 541
+W PPP G G PPP GG PPP G + PP
Sbjct: 295 MWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-MPPPPPPGM---RYPGGMPPP 350
Query: 540 XPP 532
PP
Sbjct: 351 PPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPPXPP 532
PPP G PPP G PPP FG PP PP
Sbjct: 297 PPPPPS-SGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Frame = -2
Query: 705 LWXXPPPKQXGG-----GXXXXXPPPXXGGXXXKXXGGKQXXPPPXGXFGGLFXXXFXPP 541
+W PPP G G PPP GG PPP G + PP
Sbjct: 305 MWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-MPPPPPPGM---RYPGGMPPP 360
Query: 540 XPP 532
PP
Sbjct: 361 PPP 363
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 689 PQNKXGGGXXXXXPPPXXGGXXXXXGG 609
P N GGG PPP GG GG
Sbjct: 261 PTNPMGGGGGYPQPPPQQGGGGGGAGG 287
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 693 PPPKQXGGGXXXXXPPPXXGGXXXKXXGGKQXXPPPXG 580
PPP+ GG PPP GG + PPP G
Sbjct: 1574 PPPR---GGSHCQGPPPLMGGPPPRLGMPPPGPPPPNG 1608
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,608
Number of Sequences: 27780
Number of extensions: 221106
Number of successful extensions: 612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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