Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F12
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    28   2.1  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   2.7  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   6.3  

>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 643 AEYPKPMQEHQQPEHCAHIYSIGIQHLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIY 464
           ++ PKP + H  PE    I+S  I   E+     T+  +T++   P+S    +PS Q   
Sbjct: 284 SKVPKPSETHTDPEKDKKIFS-KICKTEELLELPTLSAVTSDSAQPHSLPASMPSSQPQS 342

Query: 463 GSDFGTLPI*H 431
            S+  +LP+ H
Sbjct: 343 RSE--SLPLTH 351


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 343 DLYEPDYLISLQPDEPVYDCLNLQLKGYDYAIL 441
           D Y  + +I +QPDE +Y  +N++  G   A L
Sbjct: 364 DAYHNELVIRVQPDEAIYFKMNIKQPGLSEAPL 396


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -2

Query: 552 TWLEPLYL*LLSRCRPTVLYL*SHHFSISMDLTLARFQYSIIITFKLQVQTVIDWLIRL* 373
           TW   LYL L  R    V    +H+FS ++ L L + Q++ I T  L V  +I +++   
Sbjct: 455 TWWGWLYLDLKERRWLYVYACFAHYFSFALVLALVQ-QFAKIQTILLFVIEIISFILL-- 511

Query: 372 ANQVIRFI*VTFKSSLICYYMICPNRI 292
              V R   V FK+S  C +++   R+
Sbjct: 512 --AVFRPF-VGFKNS-FCVFLVALTRV 534


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 583 NIYERNVQVVDVPAWALGTLLRVSRGSFTGGMH 681
           +I++  +      A   G LLR+ R S+ GG+H
Sbjct: 11  HIFDHLISFDKFEAKNFGGLLRICRSSYVGGLH 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,107
Number of Sequences: 5004
Number of extensions: 59030
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)