Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP27_F_F12
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    31   1.6  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    30   2.9  
07_01_0626 - 4681826-4682707                                           29   5.0  

>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +1

Query: 196 IDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISL 375
           I  L +N +  M R+N  + + + + +QL  +D + +  +   +RR K+  +EP YL  +
Sbjct: 231 IKQLSDNTFQLMFRSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKA--FEPTYLYGV 288

Query: 376 Q 378
           +
Sbjct: 289 E 289


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 24/88 (27%), Positives = 42/88 (47%)
 Frame = -1

Query: 604 EHCAHIYSIGIQHLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIYGSDFGTLPI*HNH 425
           E+C  +  + +Q    + L   ++P +   +S N   LV+   Q I G    T+     H
Sbjct: 353 ENCTELIELSLQ----WNLLDGILPSSVSNISTNLQALVLRGNQ-ISGRIPSTIG--KLH 405

Query: 424 NL*VASSNSHRLAHQVVS*SGNQVHIGH 341
           NL +   + ++L+ Q+ S  GN  H+GH
Sbjct: 406 NLYILDLSINKLSGQIPSTIGNISHLGH 433


>07_01_0626 - 4681826-4682707
          Length = 293

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 244 LKNLIKSCRSVQLKIIDSVGTNHIIT 321
           L N++ +CR+++L+ I SVG   ++T
Sbjct: 117 LNNMLVTCRNIKLESITSVGITRVVT 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,076,169
Number of Sequences: 37544
Number of extensions: 357524
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)